Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004265`

染色体: Chr03 坐标: 61134118-61138266 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004265`
名称	SmilChr03G004265
描述	uncharacterized SmilChr03G004265
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61134118 - 61138266 / `+`

ID 对照

NCBI Gene ID	`LOC131015144`
GeneID	`131015144`
locus_tag	`-`
NCBI Name	`LOC131015144`
原始查询	`SmilChr03G004265`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:832258]; symbol=AT5G21280; hit=AT5G21280; species=arabidopsis; confidence=medium
产物	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:832258]; symbol=AT5G21280; hit=AT5G21280; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G21280` (AT5G21280) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:832258] identity=36.9; qcov=0.866; evalue=5.49e-30; confidence=medium
Rice	`-` -
GO	-
KEGG	-
Pfam	PF30938 (ATR7)
InterPro	-
eggNOG	-
NR	GeneID:131015144

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799384.1`
2	Chromosome	染色体	0.00000	`XP_057799384.1`
3	Centromere	着丝粒	0.00000	`XP_057799384.1`
4	Chromatin	染色质	0.00000	`XP_057799384.1`
5	Telomere	端粒	0.00000	`XP_057799384.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61135759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B2,B61,B91
`Chr3:61135762`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	B104
`Chr3:61135762`	`T`	`TGC`	2bp_insertion	CDS_variant	1	B104
`Chr3:61135764`	`A`	`AGG`	2bp_insertion	frameshift_variant	36	A4,A5,A7,A8,B127,B129,B136,B139,B22,B25,B34,B38,B39,B40,B49,B56,B68,B7,B76,B88,B9,B96,B99,C1,C14,C19,C2,C22,C30,C32,C58,C68,C77,C78,D1,D2
`Chr3:61135767`	`G`	`GGA`	2bp_insertion	frameshift_variant	4	B112,B136,B66,C55
`Chr3:61135767`	`G`	`GGA`	2bp_insertion	CDS_variant	4	B112,B136,B66,C55
`Chr3:61135768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,B2,B61,B91
`Chr3:61136804`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	46	A14,A15,A2,A21,B103,B105,B106,B111,B114,B122,B13,B133,B136,B140,B16,B32,B40,B46,B48,B52,B59,B60,B71,B8,B82,B86,C16,C22,C25,C32,C37,C39,C42,C43,C48,C51,C58,C61,C67,C68,C8,C80,C82,C85,C86,D3
`Chr3:61136807`	`GCT`	`G`	2bp_deletion	frameshift_variant	45	A14,A15,A2,A21,B103,B105,B106,B111,B114,B122,B13,B133,B136,B140,B16,B32,B40,B46,B48,B52,B59,B60,B71,B8,B82,B86,C16,C22,C25,C32,C37,C39,C42,C48,C51,C58,C61,C67,C68,C8,C80,C82,C85,C86,D3
`Chr3:61136920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:61137035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,C84
`Chr3:61137066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799384.1

391 aa

196

391

ATR7

PF30938 ATR7 24-391 aa

XP_057799385.1

366 aa

183

366

ATR7

PF30938 ATR7 10-366 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799384.1`	Pfam	`PF30938`	ATR7	Family	24	391	3.1e-130	435.2	AAL-toxin resistant protein 7
`XP_057799385.1`	Pfam	`PF30938`	ATR7	Family	10	366	1.3e-122	410.2	AAL-toxin resistant protein 7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943401.1
AAAGTATATACATCCACTCACCATCTCTCCTCCTGTCCTGATAATTCAGAAAAACAAATAAAAATGAAATCACAATTTTTGATATCTATCTCCCTACATCTTGGCAACTTGATTCACATCAGATTTCTCTCATCATCACCATCACCAAACATTATAATAATTGAATACAGACATTTTCCGCAGCGGCGGTGTGAAAGGAATCATACGCCTATGAATATTTATTGTGTGGATATGTATACAGTTATGGCGGAAAATGTTGT...

XM_057943402.1
AAAGTATATACATCCACTCACCATCTCTCCTCCTGTCCTGATAATTCAGAAAAACAAATAAAAATGAAATCACAATTTTTGATATCTATCTCCCTACATCTTGGCAACTTGATTCACATCAGATTTCTCTCATCATCACCATCACCAAACATTATAATAATTGAATACAGACATTTTCCGCAGCGGCGGTGTGAAAGGAATCATACGCCTATGAATATTTATTGTGTGGATATGTATACAGTTATGGCGGAAAATGTTGT...

CDS

2 records

下载 CDS FASTA

LOC131015144
ATGAAAACTGAAACAATGAGGGGGGGAAGCCTTGTCAAACAGTTATCCTCTTCAAGAACCAAAGATTCATCCAATCCCAGCTTAGAGGGAGACGGGAATTCGAGCAGCGAAAGCTTGTTTGGAAGTAGTTGTGATGGATTTTCTGATCAGAAACAAGAAAAATTCCCTCCGCCACCTCAACCACACAAGAAGCAAGTGCGGAGGCGGCTGCATACCAGCAGACCTTACCAAGAAAGGCTGCTAAATATGGCTGAAGCGCG...

LOC131015144
ATGAGGGGTAAATCTTCTTCATCAAAGTCTAAAAATGGTGGAGTAGGAACCGAGAAGCTTGATAAACTGAATGAGCCTCATTTGTCAGGTGCTTACATTCGCAGCCTTGTCAAACAGTTATCCTCTTCAAGAACCAAAGATTCATCCAATCCCAGCTTAGAGGGAGACGGGAATTCGAGCAGCGAAAGCTTGTTTGGAAGTAGTTGTGATGGATTTTCTGATCAGAAACAAGAAAAATTCCCTCCGCCACCTCAACCACA...

Protein

2 records

下载 Protein FASTA

XP_057799384.1
MRGKSSSSKSKNGGVGTEKLDKLNEPHLSGAYIRSLVKQLSSSRTKDSSNPSLEGDGNSSSESLFGSSCDGFSDQKQEKFPPPPQPHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKFHRAAMKQASERQQQMEISSETQLFESPSHQFSLEQEDKLKLRRNPRVHASNSLLPDKFPSGYLDNFSHSPYSWSVSPIASPPPPVHENFNFTLPSQTLGLNLNLQDFNNLDSTFHCSTNPSSIYSSSSPSTSSSPLSAT...

XP_057799385.1
MKTETMRGGSLVKQLSSSRTKDSSNPSLEGDGNSSSESLFGSSCDGFSDQKQEKFPPPPQPHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKFHRAAMKQASERQQQMEISSETQLFESPSHQFSLEQEDKLKLRRNPRVHASNSLLPDKFPSGYLDNFSHSPYSWSVSPIASPPPPVHENFNFTLPSQTLGLNLNLQDFNNLDSTFHCSTNPSSIYSSSSPSTSSSPLSATTQEILCMGAPASVAEFGDSGLHPVM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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