当前解析结果
SmilChr03G004267| 统一新 Gene ID | SmilChr03G004267 |
|---|---|
| 名称 | SmilChr03G004267 |
| 描述 | 24-methylenesterol C-methyltransferase 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61151847 - 61152224 / - |
| NCBI Gene ID | LOC131019095 |
|---|---|
| GeneID | 131019095 |
| locus_tag | - |
| NCBI Name | LOC131019095 |
| 原始查询 | SmilChr03G004267 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 24-methylenesterol C-methyltransferase 2-like |
| 产物 | 24-methylenesterol C-methyltransferase 2-like |
| Arabidopsis | AT1G20330 (SMT2)sterol methyltransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838621] identity=72.3; qcov=1.04; evalue=9.81e-64; confidence=high |
| Rice | Os03g0136200 (Ossmt2-1)- identity=58.2; qcov=1.07; evalue=1.72e-47; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019095 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057803760.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057803760.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057803760.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803760.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803760.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61151856 |
A |
AC |
1bp_insertion | frameshift_variant | 30 | A3,A6,B112,B124,B130,B134,B136,B15,B35,B66,B71,B72,B79,B83,B9,B98,C10,C14,C16,C2,C21,C38,C42,C5,C51,C59,C61,C73,D5,D9 |
Chr3:61151860 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B9,C10 |
Chr3:61151860 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B9,C10 |
Chr3:61151879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B29,C19 |
Chr3:61151882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B121,B59,B89 |
Chr3:61151897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B13,B136,B55,C83 |
Chr3:61151910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:61151918 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B95 |
Chr3:61151918 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B95 |
Chr3:61151930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr3:61151942 |
C |
CG |
1bp_insertion | frameshift_variant | 5 | A3,B119,B121,B59,B89 |
Chr3:61151942 |
C |
CG |
1bp_insertion | CDS_variant | 5 | A3,B119,B121,B59,B89 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。