Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004275`

染色体: Chr03 坐标: 61201250-61203156 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004275`
名称	SmilChr03G004275
描述	uncharacterized SmilChr03G004275
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61201250 - 61203156 / `-`

ID 对照

NCBI Gene ID	`LOC131015152`
GeneID	`131015152`
locus_tag	`-`
NCBI Name	`LOC131015152`
原始查询	`SmilChr03G004275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820811]; symbol=AT3G15680; hit=AT3G15680; species=arabidopsis; confidence=high
产物	Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820811]; symbol=AT3G15680; hit=AT3G15680; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15680` (AT3G15680) Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820811] identity=63.6; qcov=1.08; evalue=3.76e-68; confidence=high
Rice	`Os02g0203700` (SRZ1) - identity=64.3; qcov=1.05; evalue=5.57e-58; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00641 (Zn_ribbon_RanBP)
InterPro	-
eggNOG	-
NR	GeneID:131015152

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799398.1`
2	Nucleus	细胞核	0.80000	`XP_057799398.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057799398.1`
4	Nucleoplasm	核质	0.20000	`XP_057799398.1`
5	Cytosol	细胞质基质	0.20000	`XP_057799398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61202448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr3:61202462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B140,B90,B92
`Chr3:61202651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr3:61202814`	`AT`	`A`	1bp_deletion	frameshift_variant	4	B130,B56,B96,C43
`Chr3:61202814`	`AT`	`A`	1bp_deletion	CDS_variant	4	B130,B56,B96,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799398.1

163 aa

163

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 3-32 aa PF00641 Zn_ribbon_RanBP 59-88 aa PF00641 Zn_ribbon_RanBP 126-156 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799398.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	3	32	4.4e-19	68.1	Zn-finger in Ran binding protein and others
`XP_057799398.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	59	88	4.4e-19	68.1	Zn-finger in Ran binding protein and others
`XP_057799398.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	126	156	4.4e-19	68.1	Zn-finger in Ran binding protein and others

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943415.1
TTAATAATTAATGTGACGAGAATATTTGCAAAGGAAAACGAGGCCCATTCCCCAAGTATATAAACCTTCTCCACCACCACCATTTTTCTCACACATCCTACTCAACCACACACACATTTCTCTCTCTAAATTTCTCATCTCATTGGGGGAAAATGAACAGGCCAGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTTCAGAGGAGGGACTCCTGCCAGCGCTGCGGCGACCCCCGGCCAGGAGACAGGGCGGAC...

CDS

1 records

下载 CDS FASTA

LOC131015152
ATGAACAGGCCAGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTTCAGAGGAGGGACTCCTGCCAGCGCTGCGGCGACCCCCGGCCAGGAGACAGGGCGGACTACGGCAGCTTCGGCGGCAGAGGCTCCGCCGCCGCCGCCGCCTTCGGCTTCACGGGCCCGGACGTCAGGCCCGGCGACTGGTACTGCTCCGTCGCCAATTGCGGCGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGCGCCGG...

Protein

1 records

下载 Protein FASTA

XP_057799398.1
MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRPGDRADYGSFGGRGSAAAAAFGFTGPDVRPGDWYCSVANCGAHNFASRSSCFKCGAGKDDAAGGPAAFDTEMSRARAFGFGGGGGGAGAGGRSGWKSGDWICTRSGCNEHNFASRMECFRCNAPRETGSKSSF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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