当前解析结果
SmilChr03G004276| 统一新 Gene ID | SmilChr03G004276 |
|---|---|
| 名称 | SmilChr03G004276 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SRK |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61207176 - 61210474 / - |
| NCBI Gene ID | LOC131015153 |
|---|---|
| GeneID | 131015153 |
| locus_tag | - |
| NCBI Name | LOC131015153 |
| 原始查询 | SmilChr03G004276 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SRK |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase SRK |
| Arabidopsis | AT4G21380 (RK3)receptor kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:827890] identity=38; qcov=1.04; evalue=2.97e-162; confidence=medium |
| Rice | Os01g0783800- identity=39.6; qcov=1.07; evalue=2.67e-174; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015153 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799399.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799399.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799399.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799399.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799399.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61207691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B63,B64,B7 |
Chr3:61207751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:61207796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,B95 |
Chr3:61208366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:61208528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C82 |
Chr3:61208633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C40 |
Chr3:61208854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B53 |
Chr3:61208874 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr3:61209203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B133,B40 |
Chr3:61209247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C27,D7 |
Chr3:61209295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B99,C16,D7 |
Chr3:61209298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799399.1PF01453
B_lectin 79-171 aa
PF08276
PAN_2 310-367 aa
PF00069
Pkinase 479-679 aa
PF07714
PK_Tyr_Ser-Thr 480-680 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799399.1 |
Pfam | PF01453 |
B_lectin | Repeat | 79 | 171 | 7.7e-25 | 88.1 | D-mannose binding lectin |
XP_057799399.1 |
Pfam | PF08276 |
PAN_2 | Domain | 310 | 367 | 2.2e-06 | 28.4 | PAN-like domain |
XP_057799399.1 |
Pfam | PF00069 |
Pkinase | Domain | 479 | 679 | 2.1e-42 | 146.0 | Protein kinase domain |
XP_057799399.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 480 | 680 | 3.2e-45 | 155.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。