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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004280

染色体: Chr03 坐标: 61233220-61236207 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004280
名称SmilChr03G004280
描述pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61233220 - 61236207 / +

ID 对照

NCBI Gene IDLOC131015154
GeneID131015154
locus_tag-
NCBI NameLOC131015154
原始查询SmilChr03G004280

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like
产物pentatricopeptide repeat-containing protein At3g54980%2C mitochondrial-like
ArabidopsisAT3G54980 (AT3G54980)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824663]
identity=42; qcov=0.975; evalue=0; confidence=medium
RiceOs01g0611900
-
identity=41.7; qcov=0.698; evalue=1.13e-164; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131015154

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057799400.1
2 Chloroplast 叶绿体 0.20000 XP_057799400.1
3 Nucleus 细胞核 0.00000 XP_057799400.1
4 Chromosome 染色体 0.00000 XP_057799400.1
5 Centromere 着丝粒 0.00000 XP_057799400.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61233523 C T EMS_canonical_SNV CDS_variant 2 B73,B76
Chr3:61233538 G A EMS_canonical_SNV CDS_variant 2 B73,B76
Chr3:61233575 C T EMS_canonical_SNV CDS_variant 1 D11
Chr3:61233656 G A EMS_canonical_SNV CDS_variant 5 A21,B29,B49,B55,B79
Chr3:61233698 C T EMS_canonical_SNV CDS_variant 3 B35,B90,B92
Chr3:61233835 C T EMS_canonical_SNV CDS_variant 2 B73,B76
Chr3:61234141 C T EMS_canonical_SNV CDS_variant 1 B106
Chr3:61234169 G A EMS_canonical_SNV CDS_variant 1 B22
Chr3:61234291 G A EMS_canonical_SNV CDS_variant 1 C82
Chr3:61234382 G A EMS_canonical_SNV CDS_variant 2 B122,B24
Chr3:61234697 G A EMS_canonical_SNV CDS_variant 3 B32,C5,C87
Chr3:61234833 G A EMS_canonical_SNV CDS_variant 5 A2,A4,B107,B108,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799400.1
877 aa
N
1
438
877
PPR
PPR
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
C
PF01535 PPR 240-266 aa PF01535 PPR 307-335 aa PF13812 PPR_3 326-385 aa PF13041 PPR_2 339-386 aa PF01535 PPR 343-371 aa PF17177 PPR_long 352-485 aa PF13812 PPR_3 362-418 aa PF12854 PPR_1 369-402 aa PF01535 PPR 376-406 aa PF13041 PPR_2 376-420 aa PF12854 PPR_1 405-434 aa PF01535 PPR 411-441 aa PF17177 PPR_long 426-575 aa PF13812 PPR_3 432-490 aa PF12854 PPR_1 442-470 aa PF13041 PPR_2 443-491 aa PF01535 PPR 445-475 aa PF12854 PPR_1 473-506 aa PF13041 PPR_2 477-525 aa PF01535 PPR 480-509 aa PF13812 PPR_3 500-559 aa PF12854 PPR_1 508-541 aa PF01535 PPR 515-545 aa PF13041 PPR_2 519-561 aa PF12854 PPR_1 544-569 aa PF01535 PPR 550-580 aa PF17177 PPR_long 568-663 aa PF23276 TPR_24 568-678 aa PF13812 PPR_3 574-627 aa PF12854 PPR_1 578-610 aa PF13041 PPR_2 585-631 aa PF01535 PPR 586-615 aa PF12854 PPR_1 614-646 aa PF01535 PPR 620-648 aa PF23276 TPR_24 635-750 aa PF13812 PPR_3 641-698 aa PF12854 PPR_1 650-679 aa PF13041 PPR_2 653-699 aa PF01535 PPR 656-685 aa PF17177 PPR_long 665-823 aa PF13041 PPR_2 687-736 aa PF01535 PPR 691-719 aa PF13812 PPR_3 711-766 aa PF13041 PPR_2 725-770 aa PF01535 PPR 726-755 aa PF13812 PPR_3 748-802 aa PF12854 PPR_1 753-785 aa PF01535 PPR 760-789 aa PF13041 PPR_2 792-838 aa PF01535 PPR 796-825 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799400.1 Pfam PF01535 PPR Repeat 240 266 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 307 335 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 326 385 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 339 386 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 343 371 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF17177 PPR_long Repeat 352 485 2e-41 142.4 Pentacotripeptide-repeat region of PRORP
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 362 418 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 369 402 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 376 406 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 376 420 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 405 434 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 411 441 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF17177 PPR_long Repeat 426 575 2e-41 142.4 Pentacotripeptide-repeat region of PRORP
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 432 490 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 442 470 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 443 491 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 445 475 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 473 506 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 477 525 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 480 509 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 500 559 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 508 541 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 515 545 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 519 561 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 544 569 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 550 580 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF17177 PPR_long Repeat 568 663 2e-41 142.4 Pentacotripeptide-repeat region of PRORP
XP_057799400.1 Pfam PF23276 TPR_24 Repeat 568 678 5.6e-37 127.3 Pentatricopeptide repeat-containing protein
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 574 627 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 578 610 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 585 631 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 586 615 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 614 646 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 620 648 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF23276 TPR_24 Repeat 635 750 5.6e-37 127.3 Pentatricopeptide repeat-containing protein
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 641 698 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 650 679 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 653 699 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 656 685 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF17177 PPR_long Repeat 665 823 2e-41 142.4 Pentacotripeptide-repeat region of PRORP
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 687 736 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 691 719 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 711 766 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 725 770 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 726 755 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13812 PPR_3 Repeat 748 802 6.7e-76 251.0 Pentatricopeptide repeat domain
XP_057799400.1 Pfam PF12854 PPR_1 Repeat 753 785 2.2e-115 376.7 PPR repeat
XP_057799400.1 Pfam PF01535 PPR Repeat 760 789 6.5e-109 349.6 PPR repeat
XP_057799400.1 Pfam PF13041 PPR_2 Repeat 792 838 1.4e-140 458.1 PPR repeat family
XP_057799400.1 Pfam PF01535 PPR Repeat 796 825 6.5e-109 349.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943417.1
TCTTTCAATGTCTCAATCTCTCTCTCTAATTCATTCTATTTGTTCATCAGCTCTTCTTATTCTTCATCATCACTGGGGTGTGGTGGAGCTAATTTTTCCTAGGGTTTATTCATATCAGGATCATACTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTGGAAGCATAATCAACAGCACAACAGCTCATGAAATTTCTAATTCGCTTTCCAGCTTCACCGGCTCCTTCACGGCTGCGCTTTTCAGCAATTCCTTCA...

CDS

1 records

下载 CDS FASTA
LOC131015154
ATGAAATTTCTAATTCGCTTTCCAGCTTCACCGGCTCCTTCACGGCTGCGCTTTTCAGCAATTCCTTCAAAATCCTTATCATCATCATCTCTCCGCGAAATTACCAGAACACCACTCCCGAATTGGGGTTCCTCTGTGTCGGGCTCAAATTCAGAACCCCAAAGCGCAAGCAAAAATCGAACTTTTCCAAAACTCGATTCACAAAACGCGGAACTCAGCGACAAAAATGCTGCTGAAGCCCTCTTGTCATACAAGAATGA...

Protein

1 records

下载 Protein FASTA
XP_057799400.1
MKFLIRFPASPAPSRLRFSAIPSKSLSSSSLREITRTPLPNWGSSVSGSNSEPQSASKNRTFPKLDSQNAELSDKNAAEALLSYKNDPQIALECFNWVGKQRGFLREVGDSFFVLLHILVRFPNYHNAARGLIDDYVCRDSAPSCVVSVDHLIDCSKRFGFGLKPRLFDYFLNGYVRAQRYKDAEDCFYALVSRGILPCEIILNNFLKSLIRLNMIDNARGLFKDVVLKSIRYDCDAVYVMMCASLKDGRVEEAEKYFLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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