当前解析结果
SmilChr03G004282| 统一新 Gene ID | SmilChr03G004282 |
|---|---|
| 名称 | SmilChr03G004282 |
| 描述 | vetispiradiene synthase 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61241481 - 61244336 / - |
| NCBI Gene ID | LOC131015157 |
|---|---|
| GeneID | 131015157 |
| locus_tag | - |
| NCBI Name | LOC131015157 |
| 原始查询 | SmilChr03G004282 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vetispiradiene synthase 2-like |
| 产物 | vetispiradiene synthase 2-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=40.3; qcov=1.01; evalue=1.53e-143; confidence=medium |
| Rice | Os08g0139700 (OsTPS29)- identity=37.5; qcov=1.03; evalue=5.02e-114; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015157 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057799412.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057799412.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057799412.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799412.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799412.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61241685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:61241762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C82 |
Chr3:61241771 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B135,B77 |
Chr3:61241771 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B135,B77 |
Chr3:61241849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:61241882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:61241888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,B76 |
Chr3:61242205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr3:61242215 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:61242221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,A4,B107,B19 |
Chr3:61242311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B69,C36,D10 |
Chr3:61243431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799412.1PF01397
Terpene_synth 27-184 aa
PF03936
Terpene_synth_C 243-481 aa
PF19086
Terpene_syn_C_2 283-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799412.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 27 | 184 | 2.5e-49 | 168.3 | Terpene synthase, N-terminal domain |
XP_057799412.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 243 | 481 | 2.1e-95 | 319.4 | Terpene synthase family, metal binding domain |
XP_057799412.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 283 | 481 | 2.7e-52 | 178.2 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。