当前解析结果
SmilChr03G004297| 统一新 Gene ID | SmilChr03G004297 |
|---|---|
| 名称 | SmilChr03G004297 |
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61373556 - 61376128 / - |
| NCBI Gene ID | LOC131015180 |
|---|---|
| GeneID | 131015180 |
| locus_tag | - |
| NCBI Name | LOC131015180 |
| 原始查询 | SmilChr03G004297 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 产物 | 3-ketoacyl-CoA synthase 11-like |
| Arabidopsis | AT2G26640 (KCS11)3-ketoacyl-CoA synthase 11 [Source:NCBI gene (formerly Entrezgene);Acc:817205] identity=82.1; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0598800 (WSL1)- identity=81.8; qcov=0.969; evalue=0; confidence=high |
| GO | GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015180 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057799435.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057799435.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799435.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799435.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799435.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61373934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr3:61373992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr3:61374022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C77 |
Chr3:61374231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:61374271 |
C |
CA |
1bp_insertion | frameshift_variant | 6 | B31,B96,C22,C54,C64,C86 |
Chr3:61374277 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B31,B96,C86 |
Chr3:61374277 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B31,B96,C86 |
Chr3:61374283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:61374319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:61374415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,B73,B75 |
Chr3:61374837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:61374843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799435.1PF08392
FAE1_CUT1_RppA 94-383 aa
PF08541
ACP_syn_III_C 400-480 aa
PF02797
Chal_sti_synt_C 402-478 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799435.1 |
Pfam | PF08392 |
FAE1_CUT1_RppA | Family | 94 | 383 | 1.4e-145 | 484.8 | FAE1/Type III polyketide synthase-like protein |
XP_057799435.1 |
Pfam | PF08541 |
ACP_syn_III_C | Domain | 400 | 480 | 2.9e-10 | 40.9 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
XP_057799435.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 402 | 478 | 1e-08 | 36.0 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。