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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004315

染色体: Chr03 坐标: 61508826-61517575 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004315
名称SmilChr03G004315
描述receptor kinase-like protein Xa21
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61508826 - 61517575 / -

ID 对照

NCBI Gene IDLOC131015198
GeneID131015198
locus_tag-
NCBI NameLOC131015198
原始查询SmilChr03G004315

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor kinase-like protein Xa21
产物receptor kinase-like protein Xa21
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=33.6; qcov=1.07; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=39.3; qcov=1.02; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015198

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799456.1
2 Nucleus 细胞核 0.00000 XP_057799456.1
3 Chromosome 染色体 0.00000 XP_057799456.1
4 Centromere 着丝粒 0.00000 XP_057799456.1
5 Chromatin 染色质 0.00000 XP_057799456.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61513840 G A EMS_canonical_SNV CDS_variant 1 B32
Chr3:61513841 G A EMS_canonical_SNV CDS_variant 3 B136,B81,C5
Chr3:61513861 C T EMS_canonical_SNV CDS_variant 1 B32
Chr3:61513888 G A EMS_canonical_SNV CDS_variant 1 B103
Chr3:61513903 G A EMS_canonical_SNV CDS_variant 1 B135
Chr3:61513912 C T EMS_canonical_SNV CDS_variant 1 B100
Chr3:61513913 G A EMS_canonical_SNV CDS_variant 1 B136
Chr3:61513914 C T EMS_canonical_SNV CDS_variant 1 B100
Chr3:61513957 C T EMS_canonical_SNV CDS_variant 1 A19
Chr3:61514003 G A EMS_canonical_SNV CDS_variant 1 B132
Chr3:61514030 G A EMS_canonical_SNV CDS_variant 3 C5,C58,D11
Chr3:61514051 C T EMS_canonical_SNV CDS_variant 2 B39,B89

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799456.1
1190 aa
N
1
595
1190
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF13855 LRR_8 144-185 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF00560 LRR_1 392-413 aa PF13855 LRR_8 442-500 aa PF00560 LRR_1 465-487 aa PF00560 LRR_1 517-539 aa PF13855 LRR_8 565-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 710-732 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 878-1044 aa PF07714 PK_Tyr_Ser-Thr 880-1028 aa
XP_057799457.1
1158 aa
N
1
579
1158
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF13855 LRR_8 144-185 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF00560 LRR_1 392-413 aa PF13855 LRR_8 442-500 aa PF00560 LRR_1 465-487 aa PF00560 LRR_1 517-539 aa PF13855 LRR_8 565-625 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 710-732 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 878-1077 aa PF07714 PK_Tyr_Ser-Thr 880-1149 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799456.1 Pfam PF08263 LRRNT_2 Family 33 73 2.7e-09 37.8 Leucine rich repeat N-terminal domain
XP_057799456.1 Pfam PF13855 LRR_8 Repeat 144 185 2.1e-55 185.0 Leucine rich repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 150 172 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 174 196 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 271 293 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 295 317 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 369 390 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF13855 LRR_8 Repeat 369 427 2.1e-55 185.0 Leucine rich repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 392 413 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF13855 LRR_8 Repeat 442 500 2.1e-55 185.0 Leucine rich repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 465 487 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 517 539 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF13855 LRR_8 Repeat 565 625 2.1e-55 185.0 Leucine rich repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 591 612 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 614 635 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 710 732 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00560 LRR_1 Repeat 734 755 1.7e-61 191.5 Leucine Rich Repeat
XP_057799456.1 Pfam PF00069 Pkinase Domain 878 1044 2.2e-33 116.5 Protein kinase domain
XP_057799456.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1028 4.2e-33 115.5 Protein tyrosine and serine/threonine kinase
XP_057799457.1 Pfam PF08263 LRRNT_2 Family 33 73 2.6e-09 37.9 Leucine rich repeat N-terminal domain
XP_057799457.1 Pfam PF13855 LRR_8 Repeat 144 185 1.3e-55 185.7 Leucine rich repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 150 172 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 174 196 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 271 293 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 295 317 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 369 390 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF13855 LRR_8 Repeat 369 427 1.3e-55 185.7 Leucine rich repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 392 413 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF13855 LRR_8 Repeat 442 500 1.3e-55 185.7 Leucine rich repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 465 487 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 517 539 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF13855 LRR_8 Repeat 565 625 1.3e-55 185.7 Leucine rich repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 591 612 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 614 635 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 710 732 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00560 LRR_1 Repeat 734 755 6.8e-62 192.7 Leucine Rich Repeat
XP_057799457.1 Pfam PF00069 Pkinase Domain 878 1077 3.1e-38 132.4 Protein kinase domain
XP_057799457.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1149 2.8e-38 132.4 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057943474.1
ACAGTCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTG...
XM_057943473.1
TACAGTCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCT...

CDS

2 records

下载 CDS FASTA
LOC131015198
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...
LOC131015198
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...

Protein

2 records

下载 Protein FASTA
XP_057799456.1
MEKKLYCILPYAFLITITFPMLSSEAKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLRFLDLTHNSLSGEIPKEFGRLQSLQTLVVQFNHLSGAIPSAIFNISTLVAIALRDNELSGSLPTDMCSNLPFLAGIYLSKNRLSG...
XP_057799457.1
MEKKLYCILPYAFLITITFPMLSSEAKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLRFLDLTHNSLSGEIPKEFGRLQSLQTLVVQFNHLSGAIPSAIFNISTLVAIALRDNELSGSLPTDMCSNLPFLAGIYLSKNRLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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