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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004316

染色体: Chr03 坐标: 61508826-61527970 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004316
名称SmilChr03G004316
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61508826 - 61527970 / -

ID 对照

NCBI Gene IDLOC131015197
GeneID131015197
locus_tag-
NCBI NameLOC131015197
原始查询SmilChr03G004316

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=35.3; qcov=1.03; evalue=0; confidence=medium
RiceOs02g0216000 (B1307A11.13)
-
identity=38; qcov=1.02; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015197

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799454.1
2 Nucleus 细胞核 0.00000 XP_057799454.1
3 Chromosome 染色体 0.00000 XP_057799454.1
4 Centromere 着丝粒 0.00000 XP_057799454.1
5 Chromatin 染色质 0.00000 XP_057799454.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61524084 C T EMS_canonical_SNV CDS_variant 4 B104,B114,B115,B69
Chr3:61524095 C T EMS_canonical_SNV CDS_variant 1 C59
Chr3:61524125 G A EMS_canonical_SNV CDS_variant 3 A25,B87,D1
Chr3:61524129 C T EMS_canonical_SNV CDS_variant 1 C54
Chr3:61524135 C T EMS_canonical_SNV CDS_variant 1 B120
Chr3:61524137 G A EMS_canonical_SNV CDS_variant 3 B21,B53,D5
Chr3:61524148 C T EMS_canonical_SNV CDS_variant 3 B1,B27,C54
Chr3:61524150 G A EMS_canonical_SNV CDS_variant 2 C53,C77
Chr3:61524164 C T EMS_canonical_SNV CDS_variant 3 B121,C53,C77
Chr3:61524191 C T EMS_canonical_SNV CDS_variant 1 C83
Chr3:61524197 C T EMS_canonical_SNV CDS_variant 2 B21,D5
Chr3:61524211 C T EMS_canonical_SNV CDS_variant 1 C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799454.1
1201 aa
N
1
600
1201
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 139-180 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF13855 LRR_8 193-252 aa PF00560 LRR_1 241-262 aa PF00560 LRR_1 315-336 aa PF00560 LRR_1 338-360 aa PF00560 LRR_1 412-433 aa PF13855 LRR_8 412-470 aa PF00560 LRR_1 435-456 aa PF00560 LRR_1 485-506 aa PF13855 LRR_8 485-543 aa PF00560 LRR_1 560-582 aa PF00560 LRR_1 585-607 aa PF00560 LRR_1 634-655 aa PF00560 LRR_1 753-775 aa PF00560 LRR_1 777-798 aa PF00069 Pkinase 921-1189 aa PF07714 PK_Tyr_Ser-Thr 923-1192 aa
XP_057799455.1
1201 aa
N
1
600
1201
LRRNT_2
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 139-180 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF13855 LRR_8 193-252 aa PF00560 LRR_1 241-262 aa PF00560 LRR_1 315-336 aa PF00560 LRR_1 338-360 aa PF00560 LRR_1 412-433 aa PF13855 LRR_8 412-470 aa PF00560 LRR_1 435-456 aa PF00560 LRR_1 485-506 aa PF13855 LRR_8 485-543 aa PF00560 LRR_1 560-582 aa PF00560 LRR_1 585-607 aa PF00560 LRR_1 634-655 aa PF00560 LRR_1 753-775 aa PF00560 LRR_1 777-798 aa PF00069 Pkinase 921-1189 aa PF07714 PK_Tyr_Ser-Thr 923-1192 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799454.1 Pfam PF08263 LRRNT_2 Family 33 68 4.6e-05 24.3 Leucine rich repeat N-terminal domain
XP_057799454.1 Pfam PF13855 LRR_8 Repeat 139 180 9.2e-56 186.2 Leucine rich repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 145 167 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 169 191 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 193 214 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF13855 LRR_8 Repeat 193 252 9.2e-56 186.2 Leucine rich repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 241 262 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 315 336 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 338 360 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 412 433 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF13855 LRR_8 Repeat 412 470 9.2e-56 186.2 Leucine rich repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 435 456 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 485 506 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF13855 LRR_8 Repeat 485 543 9.2e-56 186.2 Leucine rich repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 560 582 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 585 607 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 634 655 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 753 775 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00560 LRR_1 Repeat 777 798 2.1e-61 191.2 Leucine Rich Repeat
XP_057799454.1 Pfam PF00069 Pkinase Domain 921 1189 7e-39 134.5 Protein kinase domain
XP_057799454.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 923 1192 3.1e-39 135.5 Protein tyrosine and serine/threonine kinase
XP_057799455.1 Pfam PF08263 LRRNT_2 Family 33 68 4.6e-05 24.3 Leucine rich repeat N-terminal domain
XP_057799455.1 Pfam PF13855 LRR_8 Repeat 139 180 9.2e-56 186.2 Leucine rich repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 145 167 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 169 191 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 193 214 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF13855 LRR_8 Repeat 193 252 9.2e-56 186.2 Leucine rich repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 241 262 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 315 336 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 338 360 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 412 433 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF13855 LRR_8 Repeat 412 470 9.2e-56 186.2 Leucine rich repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 435 456 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 485 506 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF13855 LRR_8 Repeat 485 543 9.2e-56 186.2 Leucine rich repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 560 582 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 585 607 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 634 655 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 753 775 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00560 LRR_1 Repeat 777 798 2.1e-61 191.2 Leucine Rich Repeat
XP_057799455.1 Pfam PF00069 Pkinase Domain 921 1189 7e-39 134.5 Protein kinase domain
XP_057799455.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 923 1192 3.1e-39 135.5 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XR_009098480.1
GGATGCAGTTATTAGCGACTTCATTATCATAATACAATCACAATTTGCAGCCATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGC...
XR_009098474.1
GGATGCAGTTATTAGCGACTTCATTATCATAATACAATCACAATTTGCAGCCATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGC...

CDS

2 records

下载 CDS FASTA
LOC131015197
ATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTTGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...
LOC131015197
ATGGAGAAAAAGCTTTCTTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTTGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

2 records

下载 Protein FASTA
XP_057799454.1
MEKKLSCILLYAFLITITFPMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSLRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNRFIGSIPKSLSNLTSLQFLDLTYNSLSGEIPKELGRLQSLQTLYVQSNHLSGAIPSAIFNISTLVSMAFTYNELSGEIPKELGRLQSLQTLYIEYNHLSGAIPSAI...
XP_057799455.1
MEKKLSCILLYAFLITITFPMLSSESKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSLRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLNLRNNRFIGSIPKSLSNLTSLQFLDLTYNSLSGEIPKELGRLQSLQTLYVQSNHLSGAIPSAIFNISTLVSMAFTYNELSGEIPKELGRLQSLQTLYIEYNHLSGAIPSAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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