当前解析结果
SmilChr03G004323| 统一新 Gene ID | SmilChr03G004323 |
|---|---|
| 名称 | SmilChr03G004323 |
| 描述 | transcriptional corepressor LEUNIG |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61599195 - 61606312 / + |
| NCBI Gene ID | LOC131015222 |
|---|---|
| GeneID | 131015222 |
| locus_tag | - |
| NCBI Name | LOC131015222 |
| 原始查询 | SmilChr03G004323 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcriptional corepressor LEUNIG |
| 产物 | transcriptional corepressor LEUNIG |
| Arabidopsis | AT4G32551 (LUG)transcriptional corepressor LEUNIG [Source:NCBI gene (formerly Entrezgene);Acc:829390] identity=74.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0607400 (OsWD40-17)- identity=64; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF08513 (LisH); PF30097 (LisH_SSDP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015222 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799495.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057799495.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799495.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799495.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799495.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61601117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C77 |
Chr3:61601131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:61601154 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C64 |
Chr3:61601154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr3:61601255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr3:61601329 |
AGC |
A |
2bp_deletion | frameshift_variant | 5 | A6,B132,B25,B68,C16 |
Chr3:61601329 |
AGC |
A |
2bp_deletion | CDS_variant | 5 | A6,B132,B25,B68,C16 |
Chr3:61601332 |
AG |
A |
1bp_deletion | frameshift_variant | 5 | A6,B132,B25,B68,C16 |
Chr3:61601332 |
AG |
A |
1bp_deletion | CDS_variant | 5 | A6,B132,B25,B68,C16 |
Chr3:61601399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B140,C45 |
Chr3:61601504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B132,B68,C16 |
Chr3:61601520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799495.1PF08513
LisH 10-36 aa
PF30097
LisH_SSDP 12-66 aa
PF00400
WD40 649-681 aa
PF00400
WD40 687-724 aa
PF00400
WD40 731-768 aa
PF00400
WD40 813-847 aa
PF00400
WD40 899-933 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799495.1 |
Pfam | PF08513 |
LisH | Domain | 10 | 36 | 4.7e-07 | 30.2 | LisH |
XP_057799495.1 |
Pfam | PF30097 |
LisH_SSDP | Domain | 12 | 66 | 6.3e-25 | 88.1 | SSDP, dimerisation domain |
XP_057799495.1 |
Pfam | PF00400 |
WD40 | Repeat | 649 | 681 | 2.1e-39 | 132.9 | WD domain, G-beta repeat |
XP_057799495.1 |
Pfam | PF00400 |
WD40 | Repeat | 687 | 724 | 2.1e-39 | 132.9 | WD domain, G-beta repeat |
XP_057799495.1 |
Pfam | PF00400 |
WD40 | Repeat | 731 | 768 | 2.1e-39 | 132.9 | WD domain, G-beta repeat |
XP_057799495.1 |
Pfam | PF00400 |
WD40 | Repeat | 813 | 847 | 2.1e-39 | 132.9 | WD domain, G-beta repeat |
XP_057799495.1 |
Pfam | PF00400 |
WD40 | Repeat | 899 | 933 | 2.1e-39 | 132.9 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。