Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004324`

染色体: Chr03 坐标: 61608372-61612644 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004324`
名称	SmilChr03G004324
描述	uncharacterized SmilChr03G004324
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61608372 - 61612644 / `+`

ID 对照

NCBI Gene ID	`LOC131015293`
GeneID	`131015293`
locus_tag	`-`
NCBI Name	`LOC131015293`
原始查询	`SmilChr03G004324`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	paramyosin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829391]; symbol=AT4G32560; hit=AT4G32560; species=arabidopsis; confidence=high
产物	paramyosin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829391]; symbol=AT4G32560; hit=AT4G32560; species=arabidopsis; confidence=high
Arabidopsis	`AT4G32560` (AT4G32560) paramyosin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829391] identity=48.5; qcov=0.988; evalue=4.75e-61; confidence=high
Rice	`-` -
GO	GO:0006893 (Golgi to plasma membrane transport)
KEGG	-
Pfam	PF09762 (CCDC93_CC)
InterPro	-
eggNOG	-
NR	GeneID:131015293

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799624.1`
2	Spindle pole body	Spindle pole body	0.20000	`XP_057799624.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057799624.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057799625.1`
5	Nucleus	细胞核	0.00000	`XP_057799624.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61608963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B140,C45
`Chr3:61609412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:61610130`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:61610138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B136
`Chr3:61610458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B64,C50,C70,C85
`Chr3:61610884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B40,B78
`Chr3:61610886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B104,B56
`Chr3:61610892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr3:61611815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799624.1

264 aa

132

264

CCDC93_CC

PF09762 CCDC93_CC 5-255 aa

XP_057799625.1

244 aa

122

244

CCDC93_CC

PF09762 CCDC93_CC 5-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799624.1`	Pfam	`PF09762`	CCDC93_CC	Coiled-coil	5	255	4.8e-49	168.3	CCDC93 coiled-coil domain
`XP_057799625.1`	Pfam	`PF09762`	CCDC93_CC	Coiled-coil	5	243	8.5e-45	154.3	CCDC93 coiled-coil domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943642.1
AAATGGTTATTTACAGCTATTATCTCAAATTCTTGCATTTTTTTTCTAAAGCAAATTCTTGCATATTATTTCGCCAATTTCTATAAATTCATAATTATTTAAATTTTGATGCTTGGAACTGGTATTCCACAAGCTGCAAACAATGGCGAAAGACGAGGAGGCTGATGTTCTGGAGGAAGTGCGAATTCTACGCGAAAAAATCGACAAAGAATGCCCTAGTTCAATTGGATGGAGACTGGTTTCACTTTTGGGGTCTATGA...

XM_057943641.1
AAATGGTTATTTACAGCTATTATCTCAAATTCTTGCATTTTTTTTCTAAAGCAAATTCTTGCATATTATTTCGCCAATTTCTATAAATTCATAATTATTTAAATTTTGATGCTTGGAACTGGTATTCCACAAGCTGCAAACAATGGCGAAAGACGAGGAGGCTGATGTTCTGGAGGAAGTGCGAATTCTACGCGAAAAAATCGACAAAGAATGCCCTAGTTCAATTGGATGGAGACTGGTTTCACTTTTGGGGTCTATGA...

CDS

2 records

下载 CDS FASTA

LOC131015293
ATGGCGAAAGACGAGGAGGCTGATGTTCTGGAGGAAGTGCGAATTCTACGCGAAAAAATCGACAAAGAATGCCCTAGTTCAATTGGATGGAGACTGGTTTCACTTTTGGGGTCTATGAAGGAGCTTGAGAAACAAGAAGTAGATTTCCAGTCCCAACGCGGTTCAGATTGTTCAAGATTGCAGCAGGAGGTTGATGAACTTGATCAGATGTTGAATAGTGGTGCAAATTATGAAGATTCTGATGCATTTCATCATTCTTT...

Protein

2 records

下载 Protein FASTA

XP_057799624.1
MAKDEEADVLEEVRILREKIDKECPSSIGWRLVSLLGSMKELEKQEVDFQSQRGSDCSRLQQEVDELDQMLNSGANYEDSDAFHHSLQDSSERLESVKKELATKLRSIVLLKRQLDEVPSQAELIQYELRLSELNTQIQKKLRQTRKHYDTYNALLEIKDLMLKETSLLNSINVQFQNAITSADGRVKLTNSLEGILNGTQQKLEKVQSTLELEQKSCDTIKEKYTAAISEQRQSSSLVKLFQEECARNERLRSQMHEHG...

XP_057799625.1
MAKDEEADVLEEVRILREKIDKECPSSIGWRLVSLLGSMKELEKQEVDFQSQRGSDCSRLQQEVDELDQMLNSGANYEDSDAFHHSLQDSSERLESVKKELATKLRSIVLLKRQLDEVPSQAELIQYELRLSELNTQIQKKLRQTRKHYDTYNALLEIKDLMLKETSLLNSINVQFQNAITSADGRVKLTNSLEGILNGTQQKLEKVQSTLELEQKSCDTIKEKYTAAISEQRQSSSLVKLFQL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器