Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004329

染色体: Chr03 坐标: 61638291-61645328 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004329
名称SmilChr03G004329
描述pentatricopeptide repeat-containing protein At5g11310, mitochondrial
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61638291 - 61645328 / -

ID 对照

NCBI Gene IDLOC131015249
GeneID131015249
locus_tag-
NCBI NameLOC131015249
原始查询SmilChr03G004329

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g11310, mitochondrial
产物pentatricopeptide repeat-containing protein At5g11310%2C mitochondrial
ArabidopsisAT5G11310 (AT5G11310)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831002]
identity=47; qcov=0.974; evalue=2.76e-174; confidence=high
RiceOs01g0506100
-
identity=41; qcov=0.883; evalue=4.25e-123; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131015249

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057799537.1
2 Chloroplast 叶绿体 0.60000 XP_057799537.1
3 Nucleus 细胞核 0.00000 XP_057799537.1
4 Chromosome 染色体 0.00000 XP_057799537.1
5 Centromere 着丝粒 0.00000 XP_057799537.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61642771 C T EMS_canonical_SNV CDS_variant 1 B100
Chr3:61642789 C T EMS_canonical_SNV CDS_variant 3 B126,B139,B69
Chr3:61643029 G A EMS_canonical_SNV CDS_variant 4 B109,B83,B94,C83
Chr3:61643040 C T EMS_canonical_SNV CDS_variant 2 B49,B79
Chr3:61643063 G A EMS_canonical_SNV CDS_variant 2 B131,C77
Chr3:61643066 G A EMS_canonical_SNV CDS_variant 2 B27,C54
Chr3:61643094 G A EMS_canonical_SNV CDS_variant 1 B72
Chr3:61643104 C T EMS_canonical_SNV CDS_variant 3 A2,B82,D4
Chr3:61643117 G A EMS_canonical_SNV CDS_variant 4 B121,B23,B63,C82
Chr3:61643224 C T EMS_canonical_SNV CDS_variant 4 A2,B2,B82,D4
Chr3:61643326 C T EMS_canonical_SNV CDS_variant 4 B127,B131,B27,C54
Chr3:61643433 C T EMS_canonical_SNV CDS_variant 3 B100,B46,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799537.1
574 aa
N
1
287
574
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
C
PF01535 PPR 158-180 aa PF13812 PPR_3 230-271 aa PF13041 PPR_2 230-279 aa PF01535 PPR 234-263 aa PF23276 TPR_24 235-325 aa PF17177 PPR_long 248-352 aa PF12854 PPR_1 262-294 aa PF13812 PPR_3 262-314 aa PF13041 PPR_2 266-312 aa PF01535 PPR 268-298 aa PF12854 PPR_1 297-327 aa PF01535 PPR 304-328 aa PF12854 PPR_1 335-363 aa PF13041 PPR_2 335-382 aa PF13812 PPR_3 337-380 aa PF01535 PPR 338-368 aa PF01535 PPR 408-438 aa
XP_057799539.1
574 aa
N
1
287
574
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
C
PF01535 PPR 158-180 aa PF13812 PPR_3 230-271 aa PF13041 PPR_2 230-279 aa PF01535 PPR 234-263 aa PF23276 TPR_24 235-325 aa PF17177 PPR_long 248-352 aa PF12854 PPR_1 262-294 aa PF13812 PPR_3 262-314 aa PF13041 PPR_2 266-312 aa PF01535 PPR 268-298 aa PF12854 PPR_1 297-327 aa PF01535 PPR 304-328 aa PF12854 PPR_1 335-363 aa PF13041 PPR_2 335-382 aa PF13812 PPR_3 337-380 aa PF01535 PPR 338-368 aa PF01535 PPR 408-438 aa
XP_057799540.1
574 aa
N
1
287
574
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
C
PF01535 PPR 158-180 aa PF13812 PPR_3 230-271 aa PF13041 PPR_2 230-279 aa PF01535 PPR 234-263 aa PF23276 TPR_24 235-325 aa PF17177 PPR_long 248-352 aa PF12854 PPR_1 262-294 aa PF13812 PPR_3 262-314 aa PF13041 PPR_2 266-312 aa PF01535 PPR 268-298 aa PF12854 PPR_1 297-327 aa PF01535 PPR 304-328 aa PF12854 PPR_1 335-363 aa PF13041 PPR_2 335-382 aa PF13812 PPR_3 337-380 aa PF01535 PPR 338-368 aa PF01535 PPR 408-438 aa
XP_057799541.1
574 aa
N
1
287
574
PPR
PPR_3
PPR_2
PPR
TPR_24
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
C
PF01535 PPR 158-180 aa PF13812 PPR_3 230-271 aa PF13041 PPR_2 230-279 aa PF01535 PPR 234-263 aa PF23276 TPR_24 235-325 aa PF17177 PPR_long 248-352 aa PF12854 PPR_1 262-294 aa PF13812 PPR_3 262-314 aa PF13041 PPR_2 266-312 aa PF01535 PPR 268-298 aa PF12854 PPR_1 297-327 aa PF01535 PPR 304-328 aa PF12854 PPR_1 335-363 aa PF13041 PPR_2 335-382 aa PF13812 PPR_3 337-380 aa PF01535 PPR 338-368 aa PF01535 PPR 408-438 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799537.1 Pfam PF01535 PPR Repeat 158 180 5.5e-41 136.7 PPR repeat
XP_057799537.1 Pfam PF13812 PPR_3 Repeat 230 271 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799537.1 Pfam PF13041 PPR_2 Repeat 230 279 4.3e-51 171.5 PPR repeat family
XP_057799537.1 Pfam PF01535 PPR Repeat 234 263 5.5e-41 136.7 PPR repeat
XP_057799537.1 Pfam PF23276 TPR_24 Repeat 235 325 1.4e-16 61.3 Pentatricopeptide repeat-containing protein
XP_057799537.1 Pfam PF17177 PPR_long Repeat 248 352 3.1e-17 63.4 Pentacotripeptide-repeat region of PRORP
XP_057799537.1 Pfam PF12854 PPR_1 Repeat 262 294 8.1e-48 160.6 PPR repeat
XP_057799537.1 Pfam PF13812 PPR_3 Repeat 262 314 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799537.1 Pfam PF13041 PPR_2 Repeat 266 312 4.3e-51 171.5 PPR repeat family
XP_057799537.1 Pfam PF01535 PPR Repeat 268 298 5.5e-41 136.7 PPR repeat
XP_057799537.1 Pfam PF12854 PPR_1 Repeat 297 327 8.1e-48 160.6 PPR repeat
XP_057799537.1 Pfam PF01535 PPR Repeat 304 328 5.5e-41 136.7 PPR repeat
XP_057799537.1 Pfam PF12854 PPR_1 Repeat 335 363 8.1e-48 160.6 PPR repeat
XP_057799537.1 Pfam PF13041 PPR_2 Repeat 335 382 4.3e-51 171.5 PPR repeat family
XP_057799537.1 Pfam PF13812 PPR_3 Repeat 337 380 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799537.1 Pfam PF01535 PPR Repeat 338 368 5.5e-41 136.7 PPR repeat
XP_057799537.1 Pfam PF01535 PPR Repeat 408 438 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF01535 PPR Repeat 158 180 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF13812 PPR_3 Repeat 230 271 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799539.1 Pfam PF13041 PPR_2 Repeat 230 279 4.3e-51 171.5 PPR repeat family
XP_057799539.1 Pfam PF01535 PPR Repeat 234 263 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF23276 TPR_24 Repeat 235 325 1.4e-16 61.3 Pentatricopeptide repeat-containing protein
XP_057799539.1 Pfam PF17177 PPR_long Repeat 248 352 3.1e-17 63.4 Pentacotripeptide-repeat region of PRORP
XP_057799539.1 Pfam PF12854 PPR_1 Repeat 262 294 8.1e-48 160.6 PPR repeat
XP_057799539.1 Pfam PF13812 PPR_3 Repeat 262 314 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799539.1 Pfam PF13041 PPR_2 Repeat 266 312 4.3e-51 171.5 PPR repeat family
XP_057799539.1 Pfam PF01535 PPR Repeat 268 298 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF12854 PPR_1 Repeat 297 327 8.1e-48 160.6 PPR repeat
XP_057799539.1 Pfam PF01535 PPR Repeat 304 328 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF12854 PPR_1 Repeat 335 363 8.1e-48 160.6 PPR repeat
XP_057799539.1 Pfam PF13041 PPR_2 Repeat 335 382 4.3e-51 171.5 PPR repeat family
XP_057799539.1 Pfam PF13812 PPR_3 Repeat 337 380 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799539.1 Pfam PF01535 PPR Repeat 338 368 5.5e-41 136.7 PPR repeat
XP_057799539.1 Pfam PF01535 PPR Repeat 408 438 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF01535 PPR Repeat 158 180 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF13812 PPR_3 Repeat 230 271 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799540.1 Pfam PF13041 PPR_2 Repeat 230 279 4.3e-51 171.5 PPR repeat family
XP_057799540.1 Pfam PF01535 PPR Repeat 234 263 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF23276 TPR_24 Repeat 235 325 1.4e-16 61.3 Pentatricopeptide repeat-containing protein
XP_057799540.1 Pfam PF17177 PPR_long Repeat 248 352 3.1e-17 63.4 Pentacotripeptide-repeat region of PRORP
XP_057799540.1 Pfam PF12854 PPR_1 Repeat 262 294 8.1e-48 160.6 PPR repeat
XP_057799540.1 Pfam PF13812 PPR_3 Repeat 262 314 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799540.1 Pfam PF13041 PPR_2 Repeat 266 312 4.3e-51 171.5 PPR repeat family
XP_057799540.1 Pfam PF01535 PPR Repeat 268 298 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF12854 PPR_1 Repeat 297 327 8.1e-48 160.6 PPR repeat
XP_057799540.1 Pfam PF01535 PPR Repeat 304 328 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF12854 PPR_1 Repeat 335 363 8.1e-48 160.6 PPR repeat
XP_057799540.1 Pfam PF13041 PPR_2 Repeat 335 382 4.3e-51 171.5 PPR repeat family
XP_057799540.1 Pfam PF13812 PPR_3 Repeat 337 380 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799540.1 Pfam PF01535 PPR Repeat 338 368 5.5e-41 136.7 PPR repeat
XP_057799540.1 Pfam PF01535 PPR Repeat 408 438 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF01535 PPR Repeat 158 180 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF13812 PPR_3 Repeat 230 271 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799541.1 Pfam PF13041 PPR_2 Repeat 230 279 4.3e-51 171.5 PPR repeat family
XP_057799541.1 Pfam PF01535 PPR Repeat 234 263 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF23276 TPR_24 Repeat 235 325 1.4e-16 61.3 Pentatricopeptide repeat-containing protein
XP_057799541.1 Pfam PF17177 PPR_long Repeat 248 352 3.1e-17 63.4 Pentacotripeptide-repeat region of PRORP
XP_057799541.1 Pfam PF12854 PPR_1 Repeat 262 294 8.1e-48 160.6 PPR repeat
XP_057799541.1 Pfam PF13812 PPR_3 Repeat 262 314 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799541.1 Pfam PF13041 PPR_2 Repeat 266 312 4.3e-51 171.5 PPR repeat family
XP_057799541.1 Pfam PF01535 PPR Repeat 268 298 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF12854 PPR_1 Repeat 297 327 8.1e-48 160.6 PPR repeat
XP_057799541.1 Pfam PF01535 PPR Repeat 304 328 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF12854 PPR_1 Repeat 335 363 8.1e-48 160.6 PPR repeat
XP_057799541.1 Pfam PF13041 PPR_2 Repeat 335 382 4.3e-51 171.5 PPR repeat family
XP_057799541.1 Pfam PF13812 PPR_3 Repeat 337 380 6.6e-29 100.5 Pentatricopeptide repeat domain
XP_057799541.1 Pfam PF01535 PPR Repeat 338 368 5.5e-41 136.7 PPR repeat
XP_057799541.1 Pfam PF01535 PPR Repeat 408 438 5.5e-41 136.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057943558.1
TTTTAGAGGCTTACTCCATTTAACATTCCCGCCAACCGTCGCCGGAAAATTCAGTCATGAGCTTCCGCCGCTGTCTAGCCACCGCCGCCCACCACCGCAGACACCTCGCCGCCGAACCAACCTTTTCGATCCCCATCCCGCCACTTGTAAAGCGGAACCCTCCACATCCACTTACTCCGCCGCCCGCTCTAAAACCTAGCGCCGACGACCCAACCTCCGCCCGCATTTCCGAACTCCTCCACAATCCGGCCCTACAGCCC...
XM_057943554.1
TTTTAGAGGCTTACTCCATTTAACATTCCCGCCAACCGTCGCCGGAAAATTCAGTCATGAGCTTCCGCCGCTGTCTAGCCACCGCCGCCCACCACCGCAGACACCTCGCCGCCGAACCAACCTTTTCGATCCCCATCCCGCCACTTGTAAAGCGGAACCCTCCACATCCACTTACTCCGCCGCCCGCTCTAAAACCTAGCGCCGACGACCCAACCTCCGCCCGCATTTCCGAACTCCTCCACAATCCGGCCCTACAGCCC...

CDS

4 records

下载 CDS FASTA
LOC131015249
ATGAGCTTCCGCCGCTGTCTAGCCACCGCCGCCCACCACCGCAGACACCTCGCCGCCGAACCAACCTTTTCGATCCCCATCCCGCCACTTGTAAAGCGGAACCCTCCACATCCACTTACTCCGCCGCCCGCTCTAAAACCTAGCGCCGACGACCCAACCTCCGCCCGCATTTCCGAACTCCTCCACAATCCGGCCCTACAGCCCGGCCCCGACCTCGAAAAGGCCCTCTCCGCGGCGGAAATCAATCCAACTCCGGCTCT...
LOC131015249
ATGAGCTTCCGCCGCTGTCTAGCCACCGCCGCCCACCACCGCAGACACCTCGCCGCCGAACCAACCTTTTCGATCCCCATCCCGCCACTTGTAAAGCGGAACCCTCCACATCCACTTACTCCGCCGCCCGCTCTAAAACCTAGCGCCGACGACCCAACCTCCGCCCGCATTTCCGAACTCCTCCACAATCCGGCCCTACAGCCCGGCCCCGACCTCGAAAAGGCCCTCTCCGCGGCGGAAATCAATCCAACTCCGGCTCT...

Protein

4 records

下载 Protein FASTA
XP_057799537.1
MSFRRCLATAAHHRRHLAAEPTFSIPIPPLVKRNPPHPLTPPPALKPSADDPTSARISELLHNPALQPGPDLEKALSAAEINPTPALLLGIFKKFDSSPKPLFTLFNWARKRPDYGFSIDVFNAMVDSLGKAREFDSAWCVILDQIGGDPSERPNFDTYVIMIRRYARAGHPFAAIRTYEYVCSLDSFHDSNAGKNLLETLLDSLCKERHVRIASNYLDTCIKKDPSWSPSVRTYNVLLHGWLRIGKLKRAERIREQMRK...
XP_057799539.1
MSFRRCLATAAHHRRHLAAEPTFSIPIPPLVKRNPPHPLTPPPALKPSADDPTSARISELLHNPALQPGPDLEKALSAAEINPTPALLLGIFKKFDSSPKPLFTLFNWARKRPDYGFSIDVFNAMVDSLGKAREFDSAWCVILDQIGGDPSERPNFDTYVIMIRRYARAGHPFAAIRTYEYVCSLDSFHDSNAGKNLLETLLDSLCKERHVRIASNYLDTCIKKDPSWSPSVRTYNVLLHGWLRIGKLKRAERIREQMRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器