当前解析结果
SmilChr03G004330| 统一新 Gene ID | SmilChr03G004330 |
|---|---|
| 名称 | SmilChr03G004330 |
| 描述 | ABC transporter G family member 32-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61645624 - 61653529 / - |
| NCBI Gene ID | LOC131015204 |
|---|---|
| GeneID | 131015204 |
| locus_tag | - |
| NCBI Name | LOC131015204 |
| 原始查询 | SmilChr03G004330 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 32-like |
| 产物 | ABC transporter G family member 32-like |
| Arabidopsis | AT2G26910 (ABCG32)pleiotropic drug resistance 4 [Source:NCBI gene (formerly Entrezgene);Acc:817232] identity=68.4; qcov=0.992; evalue=0; confidence=high |
| Rice | Os01g0177900 (PDR6)- identity=68.2; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799463.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057799463.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057799463.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799463.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799463.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61645907 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C87 |
Chr3:61645907 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C87 |
Chr3:61645939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B44,B65 |
Chr3:61645960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,B69 |
Chr3:61646092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C37 |
Chr3:61646143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B129,B13,C22 |
Chr3:61646336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:61646393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,C78 |
Chr3:61646414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B124,B53 |
Chr3:61646426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D1 |
Chr3:61646450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr3:61646603 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B124,B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799463.1PF14510
ABC_trans_N 71-121 aa
PF00005
ABC_tran 146-327 aa
PF19055
ABC2_membrane_7 360-415 aa
PF01061
ABC2_membrane 481-692 aa
PF08370
PDR_assoc 697-761 aa
PF00005
ABC_tran 866-1016 aa
PF01061
ABC2_membrane 1162-1375 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799463.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 71 | 121 | 1.1e-07 | 32.8 | ABC-transporter N-terminal |
XP_057799463.1 |
Pfam | PF00005 |
ABC_tran | Domain | 146 | 327 | 2e-38 | 132.8 | ABC transporter |
XP_057799463.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 360 | 415 | 9.8e-15 | 55.0 | ABC-2 type transporter |
XP_057799463.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 481 | 692 | 1.4e-101 | 339.1 | ABC-2 type transporter |
XP_057799463.1 |
Pfam | PF08370 |
PDR_assoc | Family | 697 | 761 | 2.1e-28 | 98.5 | Plant PDR ABC transporter associated |
XP_057799463.1 |
Pfam | PF00005 |
ABC_tran | Domain | 866 | 1016 | 2e-38 | 132.8 | ABC transporter |
XP_057799463.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1162 | 1375 | 1.4e-101 | 339.1 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。