当前解析结果
SmilChr03G004332| 统一新 Gene ID | SmilChr03G004332 |
|---|---|
| 名称 | SmilChr03G004332 |
| 描述 | uncharacterized SmilChr03G004332 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61675390 - 61676676 / + |
| NCBI Gene ID | LOC131019099 |
|---|---|
| GeneID | 131019099 |
| locus_tag | - |
| NCBI Name | LOC131019099 |
| 原始查询 | SmilChr03G004332 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| 产物 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G64950 (AT5G64950)Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=26.1; qcov=0.894; evalue=1.09e-35; confidence=low |
| Rice | Os06g0224500- identity=26.9; qcov=0.812; evalue=8.2e-29; confidence=low |
| GO | GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02536 (mTERF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019099 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057803765.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803765.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803765.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803765.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803765.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61675510 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | B103 |
Chr3:61675510 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | B103 |
Chr3:61675517 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B104 |
Chr3:61675517 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | B104 |
Chr3:61675532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B44,B65 |
Chr3:61675549 |
TGC |
T |
2bp_deletion | frameshift_variant | 36 | A1,A16,A6,B100,B101,B133,B137,B14,B16,B27,B30,B31,B33,B45,B51,B53,B6,B65,B74,B81,B93,C18,C19,C21,C30,C4,C55,C57,C61,C64,C66,C67,C78,C83,C86,C87 |
Chr3:61675592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,C31,C63 |
Chr3:61675642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C14,C51,C73 |
Chr3:61675697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr3:61675715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B33,B7 |
Chr3:61675755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B41 |
Chr3:61675923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,B87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803765.1PF02536
mTERF 42-180 aa
PF02536
mTERF 82-357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803765.1 |
Pfam | PF02536 |
mTERF | Family | 42 | 180 | 8e-46 | 157.1 | mTERF |
XP_057803765.1 |
Pfam | PF02536 |
mTERF | Family | 82 | 357 | 8e-46 | 157.1 | mTERF |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。