Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004335`

染色体: Chr03 坐标: 61691675-61696963 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004335`
名称	SmilChr03G004335
描述	uncharacterized SmilChr03G004335
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61691675 - 61696963 / `+`

ID 对照

NCBI Gene ID	`LOC131015220`
GeneID	`131015220`
locus_tag	`-`
NCBI Name	`LOC131015220`
原始查询	`SmilChr03G004335`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014]; symbol=AT5G11430; hit=AT5G11430; species=arabidopsis; confidence=medium
产物	SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014]; symbol=AT5G11430; hit=AT5G11430; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G11430` (AT5G11430) SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014] identity=44; qcov=0.901; evalue=8.22e-151; confidence=medium
Rice	`Os02g0208600` - identity=41.3; qcov=0.863; evalue=1.8e-137; confidence=medium
GO	GO:0005634 (nucleus); GO:0006351 (DNA-templated transcription)
KEGG	-
Pfam	PF07500 (TFIIS_M); PF07744 (SPOC)
InterPro	-
eggNOG	-
NR	GeneID:131015220

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799492.1`
2	Chromosome	染色体	0.00000	`XP_057799492.1`
3	Centromere	着丝粒	0.00000	`XP_057799492.1`
4	Chromatin	染色质	0.00000	`XP_057799492.1`
5	Telomere	端粒	0.00000	`XP_057799492.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61692785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B122,B123,B78,C47
`Chr3:61692811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:61692955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B69
`Chr3:61692956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B40,B78
`Chr3:61693022`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B21,B55,B89,C82
`Chr3:61693038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B108,B24,B72,C23
`Chr3:61693057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B49,B79,B82,C13
`Chr3:61693064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:61693094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B108,B24,B72,C23
`Chr3:61693118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr3:61693161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B12,B44,B65
`Chr3:61693242`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799492.1

1047 aa

524

1047

TFIIS_M

SPOC

PF07500 TFIIS_M 385-468 aa PF07744 SPOC 667-815 aa

XP_057799493.1

764 aa

382

764

TFIIS_M

SPOC

PF07500 TFIIS_M 102-185 aa PF07744 SPOC 384-532 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799492.1`	Pfam	`PF07500`	TFIIS_M	Domain	385	468	1.4e-28	100.3	Transcription factor S-II (TFIIS), central domain
`XP_057799492.1`	Pfam	`PF07744`	SPOC	Domain	667	815	2.9e-30	105.9	SPOC domain
`XP_057799493.1`	Pfam	`PF07500`	TFIIS_M	Domain	102	185	1.1e-28	100.6	Transcription factor S-II (TFIIS), central domain
`XP_057799493.1`	Pfam	`PF07744`	SPOC	Domain	384	532	1.8e-30	106.6	SPOC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943509.1
TTATAATCACGAGTTCGACTTCCGTTAGCGCTTTCTCGACTACCATAAATGGCACGCACATCAAACATTTGCTTATCTTTCTAGGGTTTCTTCTCTCTCTCCTCTCTCTCTCTCTCACACACACATCTATACTTACGAAGAAATGCTTGTATTCATCACTCAGCTGTTTCGTTGTCTTCATTCGTAAATTCACATTTTCTGCCTCCATTAGGTCGAATTGGAGGATCAGCAAATCAATCACATCTATATTTGTGGTTTTT...

XM_057943510.1
AACATTTGCTTATCTTTCTAGGGTTTCTTCTCTCTCTCCTCTCTCTCTCTCTCACACACACATCTATACTTACGAAGAAATGCTTGTATTCATCACTCAGCTGTTTCGTTGTCTTCATTCGTAAATTCACATTTTCTGCCTCCATTAGGTCGAATTGGAGGATCAGCAAATCAATCACATCTATATTTGTGGTTTTTGCTTATGTTCTACATCGTTGGTGCATCATGTCCAACAATTTGGTTTCTCAGTACCCAATCTCA...

CDS

2 records

下载 CDS FASTA

LOC131015220
ATGTCCAACAATTTGGTTTCTCAGTACCCAATCTCAGGTAGGCAGTTGGTTCAGATGGAGCATGGTTCTAGCTCTCTGGAGTTTCCAGTTCCAGAGATGCCTATGAAAATGGTAGGCGAGGTGTCATGCAATCCTGAATCACATCATTTTTATGTACCAACAGATCAAAGTGGTCTATTAGAGTCACTCTCCGGTGACTCTGGGTTCAATACCTCGATGATGTCGAATAATATCTTGGGGCATAATGAATCTTCAGGTGT...

LOC131015220
ATGCACATAATCCCATCGACTCGCGGGATTCTCATGTCTCTGGTTCTAGTGAGGGAGGTGTTTACTGCTGAGCTGCCTCATGGTGGAAGCAGGGGGAATGGAGCGCAGGCTTTCCAGGGGTTCCAGTATAGTTTGCCTGATGAGGATGTTCCATTTGGAGATAACTTCTTTGTTAAAGATGATCTTTTGCAGGGCAATGGGCTTTCTTGGGCATTTGATTTTGATATGCATATGGGAGAGGGTAAGGAAAGTCAGCATGC...

Protein

2 records

下载 Protein FASTA

XP_057799492.1
MSNNLVSQYPISGRQLVQMEHGSSSLEFPVPEMPMKMVGEVSCNPESHHFYVPTDQSGLLESLSGDSGFNTSMMSNNILGHNESSGVSMGSNQVWMSNQLGPEHASSPNSVAGQKASFPFKRKAEAEPLSNNATSQQMAQPHKRPAHVGSDANSPGFLQPSAHQKRTAQSQPRLGSPVTPTQPIKKMMRNDSMSGKSGLQRGQTGKRQTTKIESASKVRSESSEGIRSKMRESLAAALALACPNQDNALITEKNQRDAHN...

XP_057799493.1
MHIIPSTRGILMSLVLVREVFTAELPHGGSRGNGAQAFQGFQYSLPDEDVPFGDNFFVKDDLLQGNGLSWAFDFDMHMGEGKESQHAEKSLKEEALGHKQEVATLTPEDLAFKVEAELFKLFGDVNKKYREKGRSLLFNLKDRNNPELRERVMSGKISPERLCSMTAEELASKELTEWRMAKAEELAQMKVLPDTEVDIRRLVRKTHKGEFQVEVEHDDAIVAEVSAGTSLLTRPQRKKAVESHSPSGASIKDKEKVVGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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