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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004336

染色体: Chr03 坐标: 61697804-61703886 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004336
名称SmilChr03G004336
描述pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61697804 - 61703886 / -

ID 对照

NCBI Gene IDLOC131015244
GeneID131015244
locus_tag-
NCBI NameLOC131015244
原始查询SmilChr03G004336

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like
产物pentatricopeptide repeat-containing protein At3g04760%2C chloroplastic-like
ArabidopsisAT1G09900 (AT1G09900)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837522]
identity=27.3; qcov=0.78; evalue=1.54e-59; confidence=low
RiceOs03g0597200 (YSA)
-
identity=28.2; qcov=0.807; evalue=1.12e-58; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131015244

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057799531.1
2 Chloroplast 叶绿体 0.20000 XP_057799531.1
3 Nucleus 细胞核 0.00000 XP_057799531.1
4 Chromosome 染色体 0.00000 XP_057799531.1
5 Centromere 着丝粒 0.00000 XP_057799531.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61701681 CT * 1bp_deletion CDS_variant 1 A19
Chr3:61701685 GTC * 2bp_deletion CDS_variant 1 A19
Chr3:61701699 C T EMS_canonical_SNV CDS_variant 1 B131
Chr3:61701723 G A EMS_canonical_SNV stop_gained 23 A7,B109,B121,B130,B133,B3,B40,B53,B65,B76,B80,B83,B85,B87,B94,B95,C14,C30,C44,C70,C86,D3,D6
Chr3:61701726 C T EMS_canonical_SNV CDS_variant 1 B71
Chr3:61701828 G A EMS_canonical_SNV CDS_variant 1 B66
Chr3:61701880 C T EMS_canonical_SNV CDS_variant 4 B139,C1,C83,D4
Chr3:61702204 C T EMS_canonical_SNV CDS_variant 1 B131
Chr3:61702267 G A EMS_canonical_SNV CDS_variant 1 C13
Chr3:61702278 C T EMS_canonical_SNV CDS_variant 1 B122
Chr3:61702315 C T EMS_canonical_SNV CDS_variant 1 B66
Chr3:61702477 G A EMS_canonical_SNV CDS_variant 5 B2,B21,B55,B89,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799531.1
603 aa
N
1
302
603
PPR_3
PPR_2
PPR_3
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF13812 PPR_3 83-131 aa PF13041 PPR_2 84-133 aa PF13812 PPR_3 113-158 aa PF01535 PPR 125-154 aa PF01535 PPR 197-223 aa PF23276 TPR_24 247-345 aa PF13812 PPR_3 254-306 aa PF13041 PPR_2 262-310 aa PF01535 PPR 264-293 aa PF13812 PPR_3 286-341 aa PF12854 PPR_1 293-325 aa PF01535 PPR 299-329 aa PF13041 PPR_2 304-345 aa PF13812 PPR_3 401-446 aa PF13041 PPR_2 402-450 aa PF01535 PPR 404-434 aa PF12854 PPR_1 432-463 aa PF01535 PPR 441-463 aa PF13812 PPR_3 471-518 aa PF01535 PPR 474-504 aa PF23276 TPR_24 478-556 aa PF13812 PPR_3 494-554 aa PF12854 PPR_1 502-535 aa PF13041 PPR_2 507-555 aa PF01535 PPR 509-538 aa PF13812 PPR_3 529-583 aa PF01535 PPR 544-574 aa
XP_057799532.1
603 aa
N
1
302
603
PPR_3
PPR_2
PPR_3
PPR
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF13812 PPR_3 83-131 aa PF13041 PPR_2 84-133 aa PF13812 PPR_3 113-158 aa PF01535 PPR 125-154 aa PF01535 PPR 197-223 aa PF23276 TPR_24 247-345 aa PF13812 PPR_3 254-306 aa PF13041 PPR_2 262-310 aa PF01535 PPR 264-293 aa PF13812 PPR_3 286-341 aa PF12854 PPR_1 293-325 aa PF01535 PPR 299-329 aa PF13041 PPR_2 304-345 aa PF13812 PPR_3 401-446 aa PF13041 PPR_2 402-450 aa PF01535 PPR 404-434 aa PF12854 PPR_1 432-463 aa PF01535 PPR 441-463 aa PF13812 PPR_3 471-518 aa PF01535 PPR 474-504 aa PF23276 TPR_24 478-556 aa PF13812 PPR_3 494-554 aa PF12854 PPR_1 502-535 aa PF13041 PPR_2 507-555 aa PF01535 PPR 509-538 aa PF13812 PPR_3 529-583 aa PF01535 PPR 544-574 aa
XP_057799533.1
559 aa
N
1
280
559
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
C
PF01535 PPR 153-179 aa PF23276 TPR_24 203-301 aa PF13812 PPR_3 210-262 aa PF13041 PPR_2 218-266 aa PF01535 PPR 220-249 aa PF13812 PPR_3 242-297 aa PF12854 PPR_1 249-281 aa PF13041 PPR_2 252-301 aa PF01535 PPR 255-285 aa PF13812 PPR_3 357-402 aa PF13041 PPR_2 358-406 aa PF01535 PPR 360-390 aa PF12854 PPR_1 388-419 aa PF01535 PPR 397-419 aa PF13812 PPR_3 427-474 aa PF01535 PPR 430-460 aa PF23276 TPR_24 434-512 aa PF13812 PPR_3 450-510 aa PF12854 PPR_1 458-491 aa PF13041 PPR_2 463-511 aa PF01535 PPR 465-494 aa PF13812 PPR_3 485-539 aa PF01535 PPR 500-530 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 83 131 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF13041 PPR_2 Repeat 84 133 4.7e-80 264.2 PPR repeat family
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 113 158 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF01535 PPR Repeat 125 154 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF01535 PPR Repeat 197 223 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF23276 TPR_24 Repeat 247 345 1.3e-25 90.5 Pentatricopeptide repeat-containing protein
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 254 306 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF13041 PPR_2 Repeat 262 310 4.7e-80 264.2 PPR repeat family
XP_057799531.1 Pfam PF01535 PPR Repeat 264 293 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 286 341 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF12854 PPR_1 Repeat 293 325 2.5e-63 210.2 PPR repeat
XP_057799531.1 Pfam PF01535 PPR Repeat 299 329 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF13041 PPR_2 Repeat 304 345 4.7e-80 264.2 PPR repeat family
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 401 446 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF13041 PPR_2 Repeat 402 450 4.7e-80 264.2 PPR repeat family
XP_057799531.1 Pfam PF01535 PPR Repeat 404 434 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF12854 PPR_1 Repeat 432 463 2.5e-63 210.2 PPR repeat
XP_057799531.1 Pfam PF01535 PPR Repeat 441 463 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 471 518 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF01535 PPR Repeat 474 504 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF23276 TPR_24 Repeat 478 556 1.3e-25 90.5 Pentatricopeptide repeat-containing protein
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 494 554 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF12854 PPR_1 Repeat 502 535 2.5e-63 210.2 PPR repeat
XP_057799531.1 Pfam PF13041 PPR_2 Repeat 507 555 4.7e-80 264.2 PPR repeat family
XP_057799531.1 Pfam PF01535 PPR Repeat 509 538 3.8e-49 162.3 PPR repeat
XP_057799531.1 Pfam PF13812 PPR_3 Repeat 529 583 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799531.1 Pfam PF01535 PPR Repeat 544 574 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 83 131 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF13041 PPR_2 Repeat 84 133 4.7e-80 264.2 PPR repeat family
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 113 158 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF01535 PPR Repeat 125 154 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF01535 PPR Repeat 197 223 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF23276 TPR_24 Repeat 247 345 1.3e-25 90.5 Pentatricopeptide repeat-containing protein
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 254 306 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF13041 PPR_2 Repeat 262 310 4.7e-80 264.2 PPR repeat family
XP_057799532.1 Pfam PF01535 PPR Repeat 264 293 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 286 341 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF12854 PPR_1 Repeat 293 325 2.5e-63 210.2 PPR repeat
XP_057799532.1 Pfam PF01535 PPR Repeat 299 329 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF13041 PPR_2 Repeat 304 345 4.7e-80 264.2 PPR repeat family
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 401 446 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF13041 PPR_2 Repeat 402 450 4.7e-80 264.2 PPR repeat family
XP_057799532.1 Pfam PF01535 PPR Repeat 404 434 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF12854 PPR_1 Repeat 432 463 2.5e-63 210.2 PPR repeat
XP_057799532.1 Pfam PF01535 PPR Repeat 441 463 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 471 518 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF01535 PPR Repeat 474 504 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF23276 TPR_24 Repeat 478 556 1.3e-25 90.5 Pentatricopeptide repeat-containing protein
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 494 554 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF12854 PPR_1 Repeat 502 535 2.5e-63 210.2 PPR repeat
XP_057799532.1 Pfam PF13041 PPR_2 Repeat 507 555 4.7e-80 264.2 PPR repeat family
XP_057799532.1 Pfam PF01535 PPR Repeat 509 538 3.8e-49 162.3 PPR repeat
XP_057799532.1 Pfam PF13812 PPR_3 Repeat 529 583 2.6e-43 146.7 Pentatricopeptide repeat domain
XP_057799532.1 Pfam PF01535 PPR Repeat 544 574 3.8e-49 162.3 PPR repeat
XP_057799533.1 Pfam PF01535 PPR Repeat 153 179 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF23276 TPR_24 Repeat 203 301 1.2e-22 81.0 Pentatricopeptide repeat-containing protein
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 210 262 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF13041 PPR_2 Repeat 218 266 1.5e-77 256.2 PPR repeat family
XP_057799533.1 Pfam PF01535 PPR Repeat 220 249 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 242 297 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF12854 PPR_1 Repeat 249 281 1.7e-55 185.1 PPR repeat
XP_057799533.1 Pfam PF13041 PPR_2 Repeat 252 301 1.5e-77 256.2 PPR repeat family
XP_057799533.1 Pfam PF01535 PPR Repeat 255 285 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 357 402 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF13041 PPR_2 Repeat 358 406 1.5e-77 256.2 PPR repeat family
XP_057799533.1 Pfam PF01535 PPR Repeat 360 390 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF12854 PPR_1 Repeat 388 419 1.7e-55 185.1 PPR repeat
XP_057799533.1 Pfam PF01535 PPR Repeat 397 419 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 427 474 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF01535 PPR Repeat 430 460 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF23276 TPR_24 Repeat 434 512 1.2e-22 81.0 Pentatricopeptide repeat-containing protein
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 450 510 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF12854 PPR_1 Repeat 458 491 1.7e-55 185.1 PPR repeat
XP_057799533.1 Pfam PF13041 PPR_2 Repeat 463 511 1.5e-77 256.2 PPR repeat family
XP_057799533.1 Pfam PF01535 PPR Repeat 465 494 3.3e-46 153.1 PPR repeat
XP_057799533.1 Pfam PF13812 PPR_3 Repeat 485 539 1.5e-36 125.0 Pentatricopeptide repeat domain
XP_057799533.1 Pfam PF01535 PPR Repeat 500 530 3.3e-46 153.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057943550.1
AAAAGGGGTTTATCTACAGCCACTGCATTTCACTAGGGTTTATGCATAAGCCCTCATTTATAACGTGGCGGGAAAGAGTAATCGGATTTCAGTTTCTCTACCAATTCCATCAAATTCTGAATGAATTCCTCCGCCTCTGTGCAATTTTTTCAAGGCACGAGTCAATTTGAGCGTTTTTCATTCAGGAAACTACAGCAACTCTCTTCCCCAAAGTGGAATTCCATCTATTTCGTGATCGTAGCTGCACGGAGTGAAGCTGT...
XM_057943549.1
AAAGGGGTTTATCTACAGCCACTGCATTTCACTAGGGTTTATGCATAAGCCCTCATTTATAACGTGGCGGGAAAGAGTAATCGGATTTCAGTTTCTCTACCAATTCCATCAAATTCTGAATGAATTCCTCCGCCTCTGTGCAATTTTTTCAAGGCACGAGTCAATTTGAGCGTTTTTCATTCAGGAAACTACAGCAACTCTCTTCCCCAAAGTGGAATTCCATCTATTTCGTGATCGTAGCTGCACGGAGTGAAGCTGTT...

CDS

3 records

下载 CDS FASTA
LOC131015244
ATGTTATTTTGCACCCTTTATCTTTTACCCAAGAGAGGAAGATTGTTTTTTTCGTTATCCCACTTAATGAGTGTTTCCACTTCTTGCTGTGCTGCTCAAGATACTGGTTTCTTGTCGGACGATAATGTGTTGCTGGAATCGTGTGAATACGGAGAGTTGCAGCAGAGGATGCAGAGGCATGCTGCCTCCGGCTGCATTAGCAAAGCCCTTGAGACTCTCAACTGTATGAGGGATCATGTTCCGGGTAAACCTACCGTTTA...
LOC131015244
ATGTTATTTTGCACCCTTTATCTTTTACCCAAGAGAGGAAGATTGTTTTTTTCGTTATCCCACTTAATGAGTGTTTCCACTTCTTGCTGTGCTGCTCAAGATACTGGTTTCTTGTCGGACGATAATGTGTTGCTGGAATCGTGTGAATACGGAGAGTTGCAGCAGAGGATGCAGAGGCATGCTGCCTCCGGCTGCATTAGCAAAGCCCTTGAGACTCTCAACTGTATGAGGGATCATGTTCCGGGTAAACCTACCGTTTA...

Protein

3 records

下载 Protein FASTA
XP_057799531.1
MLFCTLYLLPKRGRLFFSLSHLMSVSTSCCAAQDTGFLSDDNVLLESCEYGELQQRMQRHAASGCISKALETLNCMRDHVPGKPTVYDYNAMIRYFLKSGSVAFDVLFEVYSGMKRFGPSPNLLTYQTLLNGMISVGRLKDAVYITDEMMAAGFSPSFTNLSKLFKKLLKTVSVDDAVLVLEIMLSVNYIPSQCDVSALIQGLCQVGMVRVAFSLFVKLSGKGYFCGGIIYNPILWALCKSKQTCAALAVFGFLEKKGFV...
XP_057799532.1
MLFCTLYLLPKRGRLFFSLSHLMSVSTSCCAAQDTGFLSDDNVLLESCEYGELQQRMQRHAASGCISKALETLNCMRDHVPGKPTVYDYNAMIRYFLKSGSVAFDVLFEVYSGMKRFGPSPNLLTYQTLLNGMISVGRLKDAVYITDEMMAAGFSPSFTNLSKLFKKLLKTVSVDDAVLVLEIMLSVNYIPSQCDVSALIQGLCQVGMVRVAFSLFVKLSGKGYFCGGIIYNPILWALCKSKQTCAALAVFGFLEKKGFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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