Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004344`

染色体: Chr03 坐标: 61727989-61734910 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004344`
名称	SmilChr03G004344
描述	uncharacterized SmilChr03G004344
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61727989 - 61734910 / `+`

ID 对照

NCBI Gene ID	`LOC131015202`
GeneID	`131015202`
locus_tag	`-`
NCBI Name	`LOC131015202`
原始查询	`SmilChr03G004344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:829397]; symbol=AT4G32620; hit=AT4G32620; species=arabidopsis; confidence=medium
产物	Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:829397]; symbol=AT4G32620; hit=AT4G32620; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G32620` (AT4G32620) Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:829397] identity=36; qcov=1.04; evalue=0; confidence=medium
Rice	`Os01g0179500` - identity=33.9; qcov=0.61; evalue=8.29e-145; confidence=low
GO	GO:0006357 (regulation of transcription by RNA polymerase II); GO:0032777 (piccolo histone acetyltransferase complex)
KEGG	-
Pfam	PF10513 (EPL1)
InterPro	-
eggNOG	-
NR	GeneID:131015202

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799460.1`
2	Chromosome	染色体	0.00000	`XP_057799460.1`
3	Centromere	着丝粒	0.00000	`XP_057799460.1`
4	Chromatin	染色质	0.00000	`XP_057799460.1`
5	Telomere	端粒	0.00000	`XP_057799460.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61728957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr3:61729001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B114,B69,B85
`Chr3:61729014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,B41
`Chr3:61729019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B65,C62
`Chr3:61729061`	`AGT`	`A`	2bp_deletion	frameshift_variant	1	C26
`Chr3:61729061`	`AGT`	`A`	2bp_deletion	CDS_variant	1	C26
`Chr3:61729075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B65,C62
`Chr3:61729127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,B48
`Chr3:61729154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B55,B89,C33
`Chr3:61729299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr3:61729321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:61729334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B55,B89,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799460.1

1684 aa

842

1684

EPL1

PF10513 EPL1 1276-1368 aa

XP_057799462.1

1684 aa

842

1684

EPL1

PF10513 EPL1 1276-1368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799460.1`	Pfam	`PF10513`	EPL1	Family	1276	1368	7.6e-10	40.4	Enhancer of polycomb-like
`XP_057799462.1`	Pfam	`PF10513`	EPL1	Family	1276	1368	7.6e-10	40.4	Enhancer of polycomb-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943479.1
TTCTGCCATCTGACAAATACAAACCCTAAAATTTTTCCCTCTCTCTCTCTAGAAAAAGGAAAAGTAATAAAAAAAACAAATTTATTTTTAGAAAAAAGGAAAAAAGGTTTTGGGAAAAAAAATAAAATAGACAAAAAAAGCAGTGAATCAAATTAGGGCTTCAAATCAAAGCTGGAAATTTCTCCTTTTTCCCATTCCCTCATTTTAACTCGAATTAGAACTCTTTCATGCTCGATCTCCACTTCTCCAATGGCGTGGTC...

XM_057943477.1
TTCTGCCATCTGACAAATACAAACCCTAAAATTTTTCCCTCTCTCTCTCTAGAAAAAGGAAAAGTAATAAAAAAAACAAATTTATTTTTAGAAAAAAGGAAAAAAGGTTTTGGGAAAAAAAATAAAATAGACAAAAAAAGCAGTGAATCAAATTAGGGCTTCAAATCAAAGCTGGAAATTTCTCCTTTTTCCCATTCCCTCATTTTAACTCGAATTAGAACTCTTTCATGCTCGATCTCCACTTCTCCAATGGCGTGGTC...

CDS

2 records

下载 CDS FASTA

LOC131015202
ATGGAAAGCAGCAAAAAGAAGTCTGGTGGCGTTGAAATTTCTAAGAAAAACCGTTCATTAGATCTCAAGAGCCTCTATGAATCCAAGTTTTCTGAAGTGAGGGGCAGTAAGAAGAAAGTTTGTGACGAAAATGATGGGGAAAGTGTTAAAAAGAAAAAAAGGAAGAGTAGGAAGGAGATTCCCCTAAGTAGTTTTGAGAGTGATGCTAAGAAAAGTAGGAAGGAGGATGTAAATGGTGTAAAACAAGAGCTTGAATTTGA...

Protein

2 records

下载 Protein FASTA

XP_057799460.1
MESSKKKSGGVEISKKNRSLDLKSLYESKFSEVRGSKKKVCDENDGESVKKKKRKSRKEIPLSSFESDAKKSRKEDVNGVKQELEFEQKSKDRSEGLHDIPLPLGNNGSSFNIPKRPRGSVRRKKLGSDQGSEPTRHSDSAGSAGEVKAEVTKSEDGEGPNDRLARVATTSSGNNCLSSVKSKRKVNGSNSKLKQKSDSKPTVKSSGSNVKLKQKTGAEEVKDNRNGESGSACHAEKEHNPVVNNKVAPPKRQQNNSRKK...

XP_057799462.1
MESSKKKSGGVEISKKNRSLDLKSLYESKFSEVRGSKKKVCDENDGESVKKKKRKSRKEIPLSSFESDAKKSRKEDVNGVKQELEFEQKSKDRSEGLHDIPLPLGNNGSSFNIPKRPRGSVRRKKLGSDQGSEPTRHSDSAGSAGEVKAEVTKSEDGEGPNDRLARVATTSSGNNCLSSVKSKRKVNGSNSKLKQKSDSKPTVKSSGSNVKLKQKTGAEEVKDNRNGESGSACHAEKEHNPVVNNKVAPPKRQQNNSRKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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