当前解析结果
SmilChr03G004345| 统一新 Gene ID | SmilChr03G004345 |
|---|---|
| 名称 | SmilChr03G004345 |
| 描述 | LRR receptor-like serine/threonine-protein kinase GSO2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61735584 - 61736510 / + |
| NCBI Gene ID | LOC131019100 |
|---|---|
| GeneID | 131019100 |
| locus_tag | - |
| NCBI Name | LOC131019100 |
| 原始查询 | SmilChr03G004345 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase GSO2 |
| 产物 | LRR receptor-like serine/threonine-protein kinase GSO2 |
| Arabidopsis | AT5G63930 (AT5G63930)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=40.8; qcov=0.828; evalue=1.81e-47; confidence=medium |
| Rice | Os11g0559200 (Xa21*)- identity=44; qcov=0.87; evalue=8.54e-59; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019100 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803766.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803766.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803766.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803766.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803766.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61735599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B85,B93,C19,C2,C58 |
Chr3:61735605 |
AT |
A |
1bp_deletion | frameshift_variant | 23 | A9,B111,B122,B123,B138,B139,B17,B32,B34,B45,B46,B54,B57,B62,B66,B8,C25,C30,C33,C5,C58,C65,D8 |
Chr3:61735611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B42,B43,B55,C28 |
Chr3:61735612 |
C |
CA |
1bp_insertion | frameshift_variant | 23 | A9,B111,B122,B123,B138,B139,B17,B32,B34,B45,B46,B54,B57,B62,B66,B8,C25,C30,C33,C5,C58,C65,D8 |
Chr3:61735622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr3:61735646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:61735674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr3:61735679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:61735764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,B86,C38 |
Chr3:61735772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,A23,B123 |
Chr3:61735782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:61735793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B27,B90,B92,C38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803766.1PF08263
LRRNT_2 35-70 aa
PF00560
LRR_1 147-169 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 244-266 aa
PF12799
LRR_4 268-303 aa
PF00560
LRR_1 269-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803766.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 35 | 70 | 3.5e-06 | 27.9 | Leucine rich repeat N-terminal domain |
XP_057803766.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 2e-26 | 87.1 | Leucine Rich Repeat |
XP_057803766.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 2e-26 | 87.1 | Leucine Rich Repeat |
XP_057803766.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 244 | 266 | 2e-26 | 87.1 | Leucine Rich Repeat |
XP_057803766.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 268 | 303 | 1.6e-23 | 82.9 | Leucine Rich repeats (2 copies) |
XP_057803766.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 269 | 290 | 2e-26 | 87.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。