当前解析结果
SmilChr03G004354| 统一新 Gene ID | SmilChr03G004354 |
|---|---|
| 名称 | SmilChr03G004354 |
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61769014 - 61771008 / - |
| NCBI Gene ID | LOC131015250 |
|---|---|
| GeneID | 131015250 |
| locus_tag | - |
| NCBI Name | LOC131015250 |
| 原始查询 | SmilChr03G004354 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat extensin-like protein 4 |
| 产物 | leucine-rich repeat extensin-like protein 4 |
| Arabidopsis | AT3G24480 (AT3G24480)Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:822038] identity=58.7; qcov=0.7; evalue=1.58e-153; confidence=high |
| Rice | Os01g0594300 (P0451D05.14-2)- identity=50.8; qcov=0.659; evalue=3.5e-128; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015250 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799542.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057799542.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799542.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799542.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799542.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61769442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,B77,C44 |
Chr3:61769452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B113,B34,B91 |
Chr3:61769506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B81,C28,C56,C83 |
Chr3:61769511 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C30 |
Chr3:61769511 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C30 |
Chr3:61769518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B5 |
Chr3:61769520 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C30 |
Chr3:61769520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr3:61769639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:61769656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:61769722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:61769774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799542.1PF08263
LRRNT_2 82-115 aa
PF13855
LRR_8 150-207 aa
PF00560
LRR_1 174-191 aa
PF13855
LRR_8 268-326 aa
PF13516
LRR_6 291-303 aa
PF00560
LRR_1 292-313 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799542.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 82 | 115 | 1.1e-05 | 26.3 | Leucine rich repeat N-terminal domain |
XP_057799542.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 150 | 207 | 2.5e-18 | 66.3 | Leucine rich repeat |
XP_057799542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 174 | 191 | 9.6e-17 | 58.2 | Leucine Rich Repeat |
XP_057799542.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 268 | 326 | 2.5e-18 | 66.3 | Leucine rich repeat |
XP_057799542.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 291 | 303 | 1.1e-07 | 32.1 | Leucine Rich repeat |
XP_057799542.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 292 | 313 | 9.6e-17 | 58.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。