当前解析结果
SmilChr03G004356| 统一新 Gene ID | SmilChr03G004356 |
|---|---|
| 名称 | SmilChr03G004356 |
| 描述 | receptor kinase-like protein Xa21 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61772997 - 61773938 / + |
| NCBI Gene ID | LOC131019102 |
|---|---|
| GeneID | 131019102 |
| locus_tag | - |
| NCBI Name | LOC131019102 |
| 原始查询 | SmilChr03G004356 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor kinase-like protein Xa21 |
| 产物 | receptor kinase-like protein Xa21 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=36.4; qcov=0.949; evalue=6.53e-45; confidence=medium |
| Rice | Os11g0490200- identity=40.3; qcov=0.952; evalue=1.26e-55; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019102 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803767.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803767.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803767.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803767.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803767.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61773009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr3:61773050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,B92,C58,C77 |
Chr3:61773066 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B53,C35 |
Chr3:61773066 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B53,C35 |
Chr3:61773074 |
CA |
C |
1bp_deletion | frameshift_variant | 10 | A2,A24,B107,B109,B19,B34,C14,C31,C48,D6 |
Chr3:61773077 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | A3 |
Chr3:61773077 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | A3 |
Chr3:61773088 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B88,C67 |
Chr3:61773124 |
C |
CGT |
2bp_insertion | frameshift_variant | 1 | D6 |
Chr3:61773124 |
C |
CGT |
2bp_insertion | CDS_variant | 1 | D6 |
Chr3:61773177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C69 |
Chr3:61773194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803767.1PF08263
LRRNT_2 35-70 aa
PF13855
LRR_8 132-182 aa
PF00560
LRR_1 147-169 aa
PF23598
LRR_14 164-276 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 195-216 aa
PF00560
LRR_1 268-291 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803767.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 35 | 70 | 3.6e-06 | 27.8 | Leucine rich repeat N-terminal domain |
XP_057803767.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 132 | 182 | 4.3e-18 | 65.5 | Leucine rich repeat |
XP_057803767.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 1e-25 | 85.0 | Leucine Rich Repeat |
XP_057803767.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 164 | 276 | 5.4e-20 | 72.2 | Leucine-rich repeat region |
XP_057803767.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 1e-25 | 85.0 | Leucine Rich Repeat |
XP_057803767.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 195 | 216 | 1e-25 | 85.0 | Leucine Rich Repeat |
XP_057803767.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 268 | 291 | 1e-25 | 85.0 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。