Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004367`

染色体: Chr03 坐标: 61885448-61890666 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004367`
名称	SmilChr03G004367
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61885448 - 61890666 / `+`

ID 对照

NCBI Gene ID	`LOC131015210`
GeneID	`131015210`
locus_tag	`-`
NCBI Name	`LOC131015210`
原始查询	`SmilChr03G004367`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=35.2; qcov=1.06; evalue=0; confidence=medium
Rice	`Os02g0216000` (B1307A11.13) - identity=38.3; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131015210

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799478.1`
2	Nucleus	细胞核	0.00000	`XP_057799478.1`
3	Chromosome	染色体	0.00000	`XP_057799478.1`
4	Centromere	着丝粒	0.00000	`XP_057799478.1`
5	Chromatin	染色质	0.00000	`XP_057799478.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61887468`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	C65
`Chr3:61887468`	`TAG`	`T`	2bp_deletion	CDS_variant	1	C65
`Chr3:61887471`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	C65
`Chr3:61887471`	`G`	`GAA`	2bp_insertion	CDS_variant	1	C65
`Chr3:61887548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr3:61888074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B52,B75,B89
`Chr3:61888136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B42,B52,B89,C68
`Chr3:61888142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C29,C60
`Chr3:61888234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B132,B134,B14,B31
`Chr3:61888244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:61888273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:61888303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799478.1

1189 aa

594

1189

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-73 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 248-269 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 369-390 aa PF13855 LRR_8 369-427 aa PF13855 LRR_8 440-500 aa PF00560 LRR_1 441-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 566-588 aa PF00560 LRR_1 591-612 aa PF00560 LRR_1 614-635 aa PF00560 LRR_1 663-684 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 877-1044 aa PF07714 PK_Tyr_Ser-Thr 880-1029 aa

XP_057799479.1

1158 aa

579

1158

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799478.1`	Pfam	`PF08263`	LRRNT_2	Family	33	73	1.4e-09	38.8	Leucine rich repeat N-terminal domain
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	150	172	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	174	196	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	248	269	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	271	293	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	369	390	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF13855`	LRR_8	Repeat	369	427	1e-50	170.0	Leucine rich repeat
`XP_057799478.1`	Pfam	`PF13855`	LRR_8	Repeat	440	500	1e-50	170.0	Leucine rich repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	441	463	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	517	539	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	566	588	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	591	612	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	614	635	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	663	684	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00560`	LRR_1	Repeat	734	755	6.3e-64	198.7	Leucine Rich Repeat
`XP_057799478.1`	Pfam	`PF00069`	Pkinase	Domain	877	1044	3.9e-34	119.0	Protein kinase domain
`XP_057799478.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	880	1029	4.4e-34	118.7	Protein tyrosine and serine/threonine kinase
`XP_057799479.1`	Pfam	`PF08263`	LRRNT_2	Family	33	73	1.3e-09	38.9	Leucine rich repeat N-terminal domain
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	150	172	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	174	196	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	248	269	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	271	293	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	369	390	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF13855`	LRR_8	Repeat	369	427	8.6e-51	170.3	Leucine rich repeat
`XP_057799479.1`	Pfam	`PF13855`	LRR_8	Repeat	440	500	8.6e-51	170.3	Leucine rich repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	441	463	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	517	539	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	566	588	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	591	612	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	614	635	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	663	684	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00560`	LRR_1	Repeat	734	755	2.8e-64	199.8	Leucine Rich Repeat
`XP_057799479.1`	Pfam	`PF00069`	Pkinase	Domain	877	1146	8.4e-39	134.3	Protein kinase domain
`XP_057799479.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	880	1149	4.3e-39	135.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943495.1
TTTGCGTATATATATATGATGATTATTGGATGCATGCGACTTCATTATCATAATACAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCAATTTGCCATATGCATTGCTAATCACCATAGCCTTCCAAATGCTTTCTTCTGAATCCAAACAGCCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCT...

XM_057943496.1
TTTGCGTATATATATATGATGATTATTGGATGCATGCGACTTCATTATCATAATACAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCAATTTGCCATATGCATTGCTAATCACCATAGCCTTCCAAATGCTTTCTTCTGAATCCAAACAGCCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCT...

CDS

2 records

下载 CDS FASTA

LOC131015210
ATGGAGAAAAAGCTTTATTGCAATTTGCCATATGCATTGCTAATCACCATAGCCTTCCAAATGCTTTCTTCTGAATCCAAACAGCCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGTTGGATTGGCGTCACTTGCAGCTTACGCCACCCAAGAGTAGCTGCCTTGAATCTCTCCAACAT...

Protein

2 records

下载 Protein FASTA

XP_057799478.1
MEKKLYCNLPYALLITIAFQMLSSESKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSLRHPRVAALNLSNMALSGTIPPQLGRLSFLVSLNLKSNFFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLSLSNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQRLQILAVQYNRLSGAIPSAIFNISTLIYMAFIDNELSGSLPTDMCRNLPFLTEIYVSYNQLSG...

XP_057799479.1
MEKKLYCNLPYALLITIAFQMLSSESKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSLRHPRVAALNLSNMALSGTIPPQLGRLSFLVSLNLKSNFFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLSLSNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQRLQILAVQYNRLSGAIPSAIFNISTLIYMAFIDNELSGSLPTDMCRNLPFLTEIYVSYNQLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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