Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004371`

染色体: Chr03 坐标: 61913057-61915900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004371`
名称	SmilChr03G004371
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61913057 - 61915900 / `+`

ID 对照

NCBI Gene ID	`LOC131019115`
GeneID	`131019115`
locus_tag	`-`
NCBI Name	`LOC131019115`
原始查询	`SmilChr03G004371`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=34.1; qcov=0.996; evalue=6.4e-129; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=36.4; qcov=0.99; evalue=1.64e-139; confidence=medium
GO	GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131019115

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803781.1`
2	Nucleus	细胞核	0.00000	`XP_057803781.1`
3	Chromosome	染色体	0.00000	`XP_057803781.1`
4	Centromere	着丝粒	0.00000	`XP_057803781.1`
5	Chromatin	染色质	0.00000	`XP_057803781.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61913078`	`AT`	`A`	1bp_deletion	frameshift_variant	2	C10,C85
`Chr3:61913078`	`AT`	`A`	1bp_deletion	CDS_variant	2	C10,C85
`Chr3:61913090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B89,B93
`Chr3:61913091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B89,B93
`Chr3:61913119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:61913153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr3:61913203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B111,B43,B86
`Chr3:61913245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:61913264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B130,D8
`Chr3:61913266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr3:61913278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C65
`Chr3:61913471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803781.1

902 aa

451

902

LRRNT_2

LRR_4

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 33-73 aa PF12799 LRR_4 126-166 aa PF00560 LRR_1 150-172 aa PF23598 LRR_14 167-279 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 198-219 aa PF13855 LRR_8 198-258 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 296-317 aa PF00560 LRR_1 402-423 aa PF00560 LRR_1 452-473 aa PF13855 LRR_8 452-510 aa PF00560 LRR_1 527-549 aa PF13855 LRR_8 575-635 aa PF00560 LRR_1 576-598 aa PF00560 LRR_1 624-645 aa PF00560 LRR_1 673-694 aa PF00560 LRR_1 720-742 aa PF13855 LRR_8 720-779 aa PF00560 LRR_1 744-765 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803781.1`	Pfam	`PF08263`	LRRNT_2	Family	33	73	1.8e-09	38.4	Leucine rich repeat N-terminal domain
`XP_057803781.1`	Pfam	`PF12799`	LRR_4	Repeat	126	166	1.4e-36	124.3	Leucine Rich repeats (2 copies)
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	150	172	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF23598`	LRR_14	Repeat	167	279	6.2e-55	187.1	Leucine-rich repeat region
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	174	196	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	198	219	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF13855`	LRR_8	Repeat	198	258	2.8e-55	184.6	Leucine rich repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	247	269	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	296	317	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	402	423	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	452	473	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF13855`	LRR_8	Repeat	452	510	2.8e-55	184.6	Leucine rich repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	527	549	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF13855`	LRR_8	Repeat	575	635	2.8e-55	184.6	Leucine rich repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	576	598	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	624	645	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	673	694	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	720	742	2.8e-59	184.9	Leucine Rich Repeat
`XP_057803781.1`	Pfam	`PF13855`	LRR_8	Repeat	720	779	2.8e-55	184.6	Leucine rich repeat
`XP_057803781.1`	Pfam	`PF00560`	LRR_1	Repeat	744	765	2.8e-59	184.9	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947798.1
ATGGACAAAAAGCTTCATTGCATTTTTGCTTATGCATTACTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCCAACAT...

CDS

1 records

下载 CDS FASTA

LOC131019115
ATGGACAAAAAGCTTCATTGCATTTTTGCTTATGCATTACTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCCAACAT...

Protein

1 records

下载 Protein FASTA

XP_057803781.1
MDKKLHCIFAYALLITITFPMLSSESKQPLSLATDQTALLSLKQHITSDPSLLLATNWTNSTSVCSWIGVTCSLRHPRVAALNLSNMALSATIPPQIGHLSFLVSLDLSNNLFYGYFPHQLSLLRRLKFISFRLNNFTGDIPPMLGQLPNLEYLSLSNNSFIGSIPKSLSNLTNLQFLDLSSNSLSGEIPKEFGRLQSLQTLSVQFNHLSGAIPSAIFNISSLVAIALRNNELSGSLPTDMCRNLPSLTRLHLSKNQLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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