当前解析结果
SmilChr03G004377| 统一新 Gene ID | SmilChr03G004377 |
|---|---|
| 名称 | SmilChr03G004377 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61991265 - 62008827 / + |
| NCBI Gene ID | LOC131019121 |
|---|---|
| GeneID | 131019121 |
| locus_tag | - |
| NCBI Name | LOC131019121 |
| 原始查询 | SmilChr03G004377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=35.4; qcov=1.07; evalue=1.28e-122; confidence=medium |
| Rice | Os11g0208900- identity=40.1; qcov=1; evalue=1.72e-133; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019121 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803788.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803788.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803788.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803788.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803788.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62006956 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | C10 |
Chr3:62006956 |
A |
AT |
1bp_insertion | CDS_variant | 1 | C10 |
Chr3:62007041 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | A7,B104,B2,B73,C41,C43,C45,C9 |
Chr3:62007092 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | B103 |
Chr3:62007092 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | B103 |
Chr3:62007096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr3:62007135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,C84 |
Chr3:62007144 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C75 |
Chr3:62007144 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C75 |
Chr3:62007149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B55,C49 |
Chr3:62007151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B1,C2 |
Chr3:62007155 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,C19,C53,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803788.1PF00560
LRR_1 24-45 aa
PF00560
LRR_1 47-68 aa
PF00560
LRR_1 96-117 aa
PF00560
LRR_1 143-165 aa
PF13855
LRR_8 143-202 aa
PF00560
LRR_1 167-188 aa
PF00069
Pkinase 311-479 aa
PF07714
PK_Tyr_Ser-Thr 313-463 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803788.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 24 | 45 | 2e-19 | 66.2 | Leucine Rich Repeat |
XP_057803788.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 47 | 68 | 2e-19 | 66.2 | Leucine Rich Repeat |
XP_057803788.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 117 | 2e-19 | 66.2 | Leucine Rich Repeat |
XP_057803788.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 143 | 165 | 2e-19 | 66.2 | Leucine Rich Repeat |
XP_057803788.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 143 | 202 | 4e-17 | 62.4 | Leucine rich repeat |
XP_057803788.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 188 | 2e-19 | 66.2 | Leucine Rich Repeat |
XP_057803788.1 |
Pfam | PF00069 |
Pkinase | Domain | 311 | 479 | 1.2e-33 | 117.4 | Protein kinase domain |
XP_057803788.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 313 | 463 | 5.5e-34 | 118.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。