Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004383`

染色体: Chr03 坐标: 62043674-62046173 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004383`
名称	SmilChr03G004383
描述	LRR receptor-like serine/threonine-protein kinase RGI5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62043674 - 62046173 / `+`

ID 对照

NCBI Gene ID	`LOC131019125`
GeneID	`131019125`
locus_tag	`-`
NCBI Name	`LOC131019125`
原始查询	`SmilChr03G004383`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase RGI5
产物	LRR receptor-like serine/threonine-protein kinase RGI5
Arabidopsis	`AT5G63930` (AT5G63930) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836514] identity=35.3; qcov=0.924; evalue=4.42e-84; confidence=medium
Rice	`Os11g0490200` - identity=34.8; qcov=1.01; evalue=5.65e-85; confidence=low
GO	GO:0005515 (protein binding)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131019125

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803794.1`
2	Nucleus	细胞核	0.00000	`XP_057803794.1`
3	Chromosome	染色体	0.00000	`XP_057803794.1`
4	Centromere	着丝粒	0.00000	`XP_057803794.1`
5	Chromatin	染色质	0.00000	`XP_057803794.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62043685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C13,C61
`Chr3:62043797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B132,B74,C69,D7
`Chr3:62043810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr3:62043875`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B117
`Chr3:62043875`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B117
`Chr3:62043882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr3:62043883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:62043913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr3:62043927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:62043928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr3:62043944`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C74
`Chr3:62043944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803794.1

619 aa

310

619

LRRNT_2

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 50-68 aa PF00560 LRR_1 145-167 aa PF23598 LRR_14 163-273 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF13855 LRR_8 193-253 aa PF00560 LRR_1 243-264 aa PF00560 LRR_1 267-288 aa PF13855 LRR_8 364-422 aa PF00560 LRR_1 387-408 aa PF00560 LRR_1 412-432 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 460-482 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803794.1`	Pfam	`PF08263`	LRRNT_2	Family	50	68	2.8e-05	25.0	Leucine rich repeat N-terminal domain
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF23598`	LRR_14	Repeat	163	273	4.1e-37	128.5	Leucine-rich repeat region
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	193	214	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF13855`	LRR_8	Repeat	193	253	8e-36	122.3	Leucine rich repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	243	264	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	267	288	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF13855`	LRR_8	Repeat	364	422	8e-36	122.3	Leucine rich repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	387	408	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	412	432	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	436	458	1.4e-43	138.1	Leucine Rich Repeat
`XP_057803794.1`	Pfam	`PF00560`	LRR_1	Repeat	460	482	1.4e-43	138.1	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947811.1
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATCACCGTAACCTTCCCAGTGCTTTCTTCAGAAGCCAAACAACCTATGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCGAACATAGATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

CDS

1 records

下载 CDS FASTA

LOC131019125
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATCACCGTAACCTTCCCAGTGCTTTCTTCAGAAGCCAAACAACCTATGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCGAACATAGATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057803794.1
MEKKLYCILPYAFLITVTFPVLSSEAKQPMSLATDQTALLSLEHRSLLLATNWTNSSSVCSWIGVTCSLRHPRVAALNLSNMALSATIPPQFGRLSFLVSLDLSNNLFYGDFPHQLSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLSLSNNSFIGSIPKLLSNLTNLQFLELSFNSLSGEIPKEFGRLQSLQTLSVRFNRLSGAIPSAIFNISTLVVIALRNNELSGSLPTDMCRNLPTLTVLSLSKNQLSGAIPSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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