Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004387`

染色体: Chr03 坐标: 62076134-62080460 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004387`
名称	SmilChr03G004387
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62076134 - 62080460 / `+`

ID 对照

NCBI Gene ID	`LOC131015211`
GeneID	`131015211`
locus_tag	`-`
NCBI Name	`LOC131015211`
原始查询	`SmilChr03G004387`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=33.8; qcov=1.07; evalue=0; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=38.8; qcov=1.02; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131015211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799480.1`
2	Nucleus	细胞核	0.00000	`XP_057799480.1`
3	Chromosome	染色体	0.00000	`XP_057799480.1`
4	Centromere	着丝粒	0.00000	`XP_057799480.1`
5	Chromatin	染色质	0.00000	`XP_057799480.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62076168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,B94,C61
`Chr3:62076179`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:62076225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,B94,C61
`Chr3:62076233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr3:62076270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr3:62076299`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B123
`Chr3:62076299`	`GA`	`G`	1bp_deletion	CDS_variant	1	B123
`Chr3:62076350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:62076400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,B88,C49
`Chr3:62076446`	`CCT`	`*`	2bp_deletion	CDS_variant	4	B110,B7,B70,C50
`Chr3:62076595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:62076611`	`AG`	`A`	1bp_deletion	frameshift_variant	21	A16,B123,B130,B132,B14,B31,B38,B39,B67,B71,B74,B82,B88,B93,C19,C22,C39,C64,C66,C75,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799480.1

1184 aa

592

1184

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-68 aa PF13855 LRR_8 120-180 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 291-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 364-422 aa PF00560 LRR_1 437-458 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 609-630 aa PF00560 LRR_1 705-727 aa PF13855 LRR_8 705-764 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1040 aa PF07714 PK_Tyr_Ser-Thr 875-1038 aa

XP_057799481.1

1153 aa

576

1153

LRRNT_2

LRR_8

LRR_4

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-68 aa PF13855 LRR_8 120-180 aa PF12799 LRR_4 121-161 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 291-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 364-422 aa PF00560 LRR_1 437-458 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 609-630 aa PF00560 LRR_1 705-727 aa PF13855 LRR_8 705-764 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1141 aa PF07714 PK_Tyr_Ser-Thr 875-1144 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799480.1`	Pfam	`PF08263`	LRRNT_2	Family	34	68	7.3e-05	23.7	Leucine rich repeat N-terminal domain
`XP_057799480.1`	Pfam	`PF13855`	LRR_8	Repeat	120	180	8.6e-51	170.3	Leucine rich repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	193	214	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	267	288	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	291	312	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	364	385	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF13855`	LRR_8	Repeat	364	422	8.6e-51	170.3	Leucine rich repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	437	458	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	586	607	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	609	630	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	705	727	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF13855`	LRR_8	Repeat	705	764	8.6e-51	170.3	Leucine rich repeat
`XP_057799480.1`	Pfam	`PF00560`	LRR_1	Repeat	729	750	2e-59	185.3	Leucine Rich Repeat
`XP_057799480.1`	Pfam	`PF00069`	Pkinase	Domain	873	1040	8.9e-35	121.1	Protein kinase domain
`XP_057799480.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	875	1038	2.8e-34	119.3	Protein tyrosine and serine/threonine kinase
`XP_057799481.1`	Pfam	`PF08263`	LRRNT_2	Family	34	68	7e-05	23.7	Leucine rich repeat N-terminal domain
`XP_057799481.1`	Pfam	`PF13855`	LRR_8	Repeat	120	180	6.4e-51	170.7	Leucine rich repeat
`XP_057799481.1`	Pfam	`PF12799`	LRR_4	Repeat	121	161	8.6e-38	128.2	Leucine Rich repeats (2 copies)
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	193	214	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	267	288	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	291	312	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	364	385	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF13855`	LRR_8	Repeat	364	422	6.4e-51	170.7	Leucine rich repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	437	458	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	586	607	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	609	630	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	705	727	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF13855`	LRR_8	Repeat	705	764	6.4e-51	170.7	Leucine rich repeat
`XP_057799481.1`	Pfam	`PF00560`	LRR_1	Repeat	729	750	8.5e-60	186.4	Leucine Rich Repeat
`XP_057799481.1`	Pfam	`PF00069`	Pkinase	Domain	873	1141	1.8e-39	136.5	Protein kinase domain
`XP_057799481.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	875	1144	2.3e-39	136.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943497.1
TGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAATCTTCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCTGTCTGCAGTTGGATTGGCGTCACTTGCAGCTTGCGCCATCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCT...

XM_057943498.1
TGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAATCTTCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCTGTCTGCAGTTGGATTGGCGTCACTTGCAGCTTGCGCCATCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCT...

CDS

2 records

下载 CDS FASTA

LOC131015211
ATGGAGAAAAAGCTTTATTGCATTTTGCTGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAATCTTCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCTGTCTGCAGTTGGATTGGCGTCACTTGCAGCTTGCGCCATCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGGCAC...

Protein

2 records

下载 Protein FASTA

XP_057799480.1
MEKKLYCILLYAFLITITFPMLSSESKQPLSLATDQSSLLSLKHTSLLLATNWTNSSSVCSWIGVTCSLRHHRVAALNLSNMALSGTIPPQLGHLSFLVSLDLSDNHFYGDLPHQLSLLRRLKFISLRLNNFTGDIPPMLGQLPNLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLRYNSLSGEIPKELGRLQSLQTLYVRFNRLSGAIPSTIFNISTLVSMGFTYNELSGSLPTDMCRNLPFLAWIDLSFNQLSGAIPTN...

XP_057799481.1
MEKKLYCILLYAFLITITFPMLSSESKQPLSLATDQSSLLSLKHTSLLLATNWTNSSSVCSWIGVTCSLRHHRVAALNLSNMALSGTIPPQLGHLSFLVSLDLSDNHFYGDLPHQLSLLRRLKFISLRLNNFTGDIPPMLGQLPNLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLRYNSLSGEIPKELGRLQSLQTLYVRFNRLSGAIPSTIFNISTLVSMGFTYNELSGSLPTDMCRNLPFLAWIDLSFNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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