当前解析结果
SmilChr03G004391| 统一新 Gene ID | SmilChr03G004391 |
|---|---|
| 名称 | SmilChr03G004391 |
| 描述 | putative receptor-like protein kinase At3g47110 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62098029 - 62098793 / + |
| NCBI Gene ID | LOC131019126 |
|---|---|
| GeneID | 131019126 |
| locus_tag | - |
| NCBI Name | LOC131019126 |
| 原始查询 | SmilChr03G004391 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor-like protein kinase At3g47110 |
| 产物 | putative receptor-like protein kinase At3g47110 |
| Arabidopsis | AT3G47110 (AT3G47110)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823864] identity=32.2; qcov=1.02; evalue=9.61e-35; confidence=low |
| Rice | Os11g0490200- identity=41.4; qcov=0.913; evalue=2.07e-41; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019126 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803795.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803795.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803795.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803795.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803795.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62098050 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B39 |
Chr3:62098050 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B39 |
Chr3:62098056 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B39 |
Chr3:62098056 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B39 |
Chr3:62098062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr3:62098063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B92 |
Chr3:62098075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:62098091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr3:62098120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,C63,C67 |
Chr3:62098207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:62098289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr3:62098396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803795.1PF08263
LRRNT_2 35-70 aa
PF00560
LRR_1 100-119 aa
PF13855
LRR_8 122-182 aa
PF12799
LRR_4 123-163 aa
PF00560
LRR_1 124-145 aa
PF00560
LRR_1 147-169 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 195-216 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803795.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 35 | 70 | 2.7e-06 | 28.3 | Leucine rich repeat N-terminal domain |
XP_057803795.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 100 | 119 | 1.3e-16 | 57.8 | Leucine Rich Repeat |
XP_057803795.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 122 | 182 | 1.5e-09 | 38.2 | Leucine rich repeat |
XP_057803795.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 123 | 163 | 1.9e-14 | 54.1 | Leucine Rich repeats (2 copies) |
XP_057803795.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 124 | 145 | 1.3e-16 | 57.8 | Leucine Rich Repeat |
XP_057803795.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 1.3e-16 | 57.8 | Leucine Rich Repeat |
XP_057803795.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 1.3e-16 | 57.8 | Leucine Rich Repeat |
XP_057803795.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 195 | 216 | 1.3e-16 | 57.8 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。