Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004393`

染色体: Chr03 坐标: 62107969-62119002 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004393`
名称	SmilChr03G004393
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62107969 - 62119002 / `+`

ID 对照

NCBI Gene ID	`LOC131019127`
GeneID	`131019127`
locus_tag	`-`
NCBI Name	`LOC131019127`
原始查询	`SmilChr03G004393`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT3G47570` (AT3G47570) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=36.9; qcov=0.473; evalue=1.89e-101; confidence=medium
Rice	`Os11g0208900` - identity=33.9; qcov=0.844; evalue=1.19e-149; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019127

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803796.1`
2	Nucleus	细胞核	0.00000	`XP_057803796.1`
3	Chromosome	染色体	0.00000	`XP_057803796.1`
4	Centromere	着丝粒	0.00000	`XP_057803796.1`
5	Chromatin	染色质	0.00000	`XP_057803796.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62109025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:62109047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:62109064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr3:62113591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B37,C66
`Chr3:62113602`	`TA`	`T`	1bp_deletion	frameshift_variant	3	B74,B96,C70
`Chr3:62113602`	`TA`	`T`	1bp_deletion	CDS_variant	3	B74,B96,C70
`Chr3:62113632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:62113640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B74,B96,C70
`Chr3:62114038`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B114
`Chr3:62114038`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B114
`Chr3:62114064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr3:62114747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803796.1

1222 aa

611

1222

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 262-283 aa PF13855 LRR_8 262-320 aa PF13855 LRR_8 333-393 aa PF00560 LRR_1 334-356 aa PF00560 LRR_1 359-380 aa PF00560 LRR_1 410-432 aa PF00560 LRR_1 720-741 aa PF00560 LRR_1 791-812 aa PF00069 Pkinase 935-1203 aa PF07714 PK_Tyr_Ser-Thr 937-1206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	262	283	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF13855`	LRR_8	Repeat	262	320	1.3e-28	99.2	Leucine rich repeat
`XP_057803796.1`	Pfam	`PF13855`	LRR_8	Repeat	333	393	1.3e-28	99.2	Leucine rich repeat
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	334	356	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	359	380	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	410	432	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	720	741	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF00560`	LRR_1	Repeat	791	812	4.5e-27	89.0	Leucine Rich Repeat
`XP_057803796.1`	Pfam	`PF00069`	Pkinase	Domain	935	1203	8.8e-39	134.2	Protein kinase domain
`XP_057803796.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	937	1206	1.8e-38	133.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947813.1
ATGGTGATTACGAAATCAAAGAGAACTGCACGAACAAAGCATACGAATGATGAATTCATGAAGGATATGAAACGTGCTATGATGGAGAGTATGTTAGAAGGGATCTTGAATAAGAGAAAGAAAATGGATGTTGTGGACAATGCTGAGCAGGAGACGTCGGAAGATTCGTCAGATGGGAGTGGGTCTTCAGTGGAAGTCGTCAAAAAGATAAGGCACGAGAAATGCAAGGAGGGGATGGTGAACTACAAAGAATGGGTTGT...

CDS

1 records

下载 CDS FASTA

LOC131019127
ATGGTGATTACGAAATCAAAGAGAACTGCACGAACAAAGCATACGAATGATGAATTCATGAAGGATATGAAACGTGCTATGATGGAGAGTATGTTAGAAGGGATCTTGAATAAGAGAAAGAAAATGGATGTTGTGGACAATGCTGAGCAGGAGACGTCGGAAGATTCGTCAGATGGGAGTGGGTCTTCAGTGGAAGTCGTCAAAAAGATAAGGCACGAGAAATGCAAGGAGGGGATGGTGAACTACAAAGAATGGGTTGT...

Protein

1 records

下载 Protein FASTA

XP_057803796.1
MVITKSKRTARTKHTNDEFMKDMKRAMMESMLEGILNKRKKMDVVDNAEQETSEDSSDGSGSSVEVVKKIRHEKCKEGMVNYKEWVVRPYRITINVIQGDCNARVTLFDQAAEGETTSTYYRGLSTQAYTEIRFMMMLKSIKFDQRGNLNIVANAIQKTQPMESINVGDIEEEPTQEEEKKHSPEKSKKINPSRKKKLQWRILPHEIGHFQNLVTFDAGHNEIAGSIDFNIFMNMSALQTIYLGHNKFAGNLLRDVGNIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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