Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004394

染色体: Chr03 坐标: 62125638-62138340 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004394
名称SmilChr03G004394
描述LRR receptor-like serine/threonine-protein kinase GSO1
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向62125638 - 62138340 / +

ID 对照

NCBI Gene IDLOC131019128
GeneID131019128
locus_tag-
NCBI NameLOC131019128
原始查询SmilChr03G004394

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述LRR receptor-like serine/threonine-protein kinase GSO1
产物LRR receptor-like serine/threonine-protein kinase GSO1
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=34.4; qcov=0.551; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=39; qcov=0.527; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131019128

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057803797.1
2 Nucleus 细胞核 0.00000 XP_057803797.1
3 Chromosome 染色体 0.00000 XP_057803797.1
4 Centromere 着丝粒 0.00000 XP_057803797.1
5 Chromatin 染色质 0.00000 XP_057803797.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:62125708 C T EMS_canonical_SNV CDS_variant 3 A7,B119,B122
Chr3:62125751 C T EMS_canonical_SNV CDS_variant 2 A24,B82
Chr3:62125759 C T EMS_canonical_SNV CDS_variant 1 B60
Chr3:62125792 G A EMS_canonical_SNV stop_gained 7 A24,B113,B117,B130,B17,B76,B83
Chr3:62125825 G A EMS_canonical_SNV CDS_variant 2 A24,B82
Chr3:62125826 C T EMS_canonical_SNV CDS_variant 1 B65
Chr3:62125834 G A EMS_canonical_SNV CDS_variant 2 A24,B82
Chr3:62125847 C T EMS_canonical_SNV CDS_variant 5 A20,B77,C6,C61,C85
Chr3:62125860 G A EMS_canonical_SNV CDS_variant 4 A24,B32,B67,C78
Chr3:62125910 C T EMS_canonical_SNV CDS_variant 4 A10,A5,B42,B43
Chr3:62125912 GCC G 2bp_deletion frameshift_variant 3 B42,B43,C49
Chr3:62125912 GCC G 2bp_deletion CDS_variant 3 B42,B43,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803797.1
2236 aa
N
1
1118
2236
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
LRR_8
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-67 aa PF00560 LRR_1 144-166 aa PF00560 LRR_1 168-190 aa PF00560 LRR_1 265-287 aa PF00560 LRR_1 289-311 aa PF00560 LRR_1 363-384 aa PF13855 LRR_8 363-421 aa PF00560 LRR_1 459-481 aa PF00560 LRR_1 564-582 aa PF00560 LRR_1 632-654 aa PF00560 LRR_1 657-678 aa PF13855 LRR_8 704-763 aa PF00560 LRR_1 729-749 aa PF00069 Pkinase 872-1140 aa PF07714 PK_Tyr_Ser-Thr 874-1140 aa PF13855 LRR_8 1226-1286 aa PF00560 LRR_1 1227-1249 aa PF00560 LRR_1 1251-1273 aa PF23598 LRR_14 1341-1548 aa PF00560 LRR_1 1348-1370 aa PF00560 LRR_1 1372-1394 aa PF00560 LRR_1 1446-1467 aa PF13855 LRR_8 1446-1504 aa PF00560 LRR_1 1469-1490 aa PF00560 LRR_1 1519-1540 aa PF13855 LRR_8 1642-1702 aa PF00560 LRR_1 1668-1689 aa PF00560 LRR_1 1811-1833 aa PF00069 Pkinase 1956-2223 aa PF07714 PK_Tyr_Ser-Thr 1958-2225 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057803797.1 Pfam PF08263 LRRNT_2 Family 33 67 2.3e-06 28.5 Leucine rich repeat N-terminal domain
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 144 166 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 168 190 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 265 287 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 289 311 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 363 384 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF13855 LRR_8 Repeat 363 421 3.8e-94 309.1 Leucine rich repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 459 481 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 564 582 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 632 654 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 657 678 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF13855 LRR_8 Repeat 704 763 3.8e-94 309.1 Leucine rich repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 729 749 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00069 Pkinase Domain 872 1140 9.3e-80 268.5 Protein kinase domain
XP_057803797.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 874 1140 2.2e-79 267.2 Protein tyrosine and serine/threonine kinase
XP_057803797.1 Pfam PF13855 LRR_8 Repeat 1226 1286 3.8e-94 309.1 Leucine rich repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1227 1249 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1251 1273 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF23598 LRR_14 Repeat 1341 1548 1e-88 298.2 Leucine-rich repeat region
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1348 1370 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1372 1394 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1446 1467 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF13855 LRR_8 Repeat 1446 1504 3.8e-94 309.1 Leucine rich repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1469 1490 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1519 1540 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF13855 LRR_8 Repeat 1642 1702 3.8e-94 309.1 Leucine rich repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1668 1689 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00560 LRR_1 Repeat 1811 1833 5.8e-96 294.1 Leucine Rich Repeat
XP_057803797.1 Pfam PF00069 Pkinase Domain 1956 2223 9.3e-80 268.5 Protein kinase domain
XP_057803797.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 1958 2225 2.2e-79 267.2 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057947814.1
ATGGAGAAAAAGCTTTATTGCATTTTTGCTTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACCTTCTCTTTTACTTGCAACTAATTGGACCAACTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCGAACATGGCTCTCTCCGCCACCAT...

CDS

1 records

下载 CDS FASTA
LOC131019128
ATGGAGAAAAAGCTTTATTGCATTTTTGCTTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACCTTCTCTTTTACTTGCAACTAATTGGACCAACTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCCAAGAGTAGCTGCCTTGAATCTCTCGAACATGGCTCTCTCCGCCACCAT...

Protein

1 records

下载 Protein FASTA
XP_057803797.1
MEKKLYCIFAYAFLITITFPMLSSESKQPLSLATDQTALLSLKPSLLLATNWTNSSSVCSWIGVTCSLRHPRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFYGDLPHQLSLLRRLKFISLRLNNFTGDIPPMLGQLPKLEYLNLRNNSFIGSIPKSLSNLTNLQFLDLTYNSLSGEIPKEFGRLQSLQTLSVQFNRLSGAIPSAIFNISTLVSMAFSYNELSGSLPTDMCRNLPLLGGIYLSDNQLSGAIPTNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器