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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004398

染色体: Chr03 坐标: 62174735-62179268 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004398
名称SmilChr03G004398
描述LRR receptor-like serine/threonine-protein kinase FLS2
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向62174735 - 62179268 / +

ID 对照

NCBI Gene IDLOC131015219
GeneID131015219
locus_tag-
NCBI NameLOC131015219
原始查询SmilChr03G004398

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述LRR receptor-like serine/threonine-protein kinase FLS2
产物LRR receptor-like serine/threonine-protein kinase FLS2
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=34.5; qcov=1.06; evalue=2.24e-174; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=38.9; qcov=0.99; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015219

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799490.1
2 Nucleus 细胞核 0.00000 XP_057799490.1
3 Chromosome 染色体 0.00000 XP_057799490.1
4 Centromere 着丝粒 0.00000 XP_057799490.1
5 Chromatin 染色质 0.00000 XP_057799490.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:62174928 G A EMS_canonical_SNV CDS_variant 2 B104,C63
Chr3:62174958 C T EMS_canonical_SNV CDS_variant 1 B55
Chr3:62174993 G A EMS_canonical_SNV CDS_variant 2 B119,B24
Chr3:62174994 C T EMS_canonical_SNV CDS_variant 2 A9,B36
Chr3:62175031 C T EMS_canonical_SNV CDS_variant 1 A8
Chr3:62175066 C T EMS_canonical_SNV CDS_variant 4 A22,B127,B64,C74
Chr3:62175155 C T EMS_canonical_SNV CDS_variant 1 B84
Chr3:62175157 G A EMS_canonical_SNV CDS_variant 2 B126,B42
Chr3:62175159 C T EMS_canonical_SNV CDS_variant 1 B98
Chr3:62175162 C T EMS_canonical_SNV CDS_variant 1 B42
Chr3:62175177 C T EMS_canonical_SNV CDS_variant 4 B20,B94,C28,C47
Chr3:62175183 C T EMS_canonical_SNV CDS_variant 4 B13,C48,C73,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799490.1
1067 aa
N
1
534
1067
LRRNT_2
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF13855 LRR_8 246-301 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 365-385 aa PF13855 LRR_8 365-422 aa PF00560 LRR_1 387-408 aa PF00560 LRR_1 460-482 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 610-630 aa PF00560 LRR_1 633-655 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 874-1040 aa PF07714 PK_Tyr_Ser-Thr 875-1024 aa
XP_057799491.1
1067 aa
N
1
534
1067
LRRNT_2
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-68 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF13855 LRR_8 246-301 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 365-385 aa PF13855 LRR_8 365-422 aa PF00560 LRR_1 387-408 aa PF00560 LRR_1 460-482 aa PF00560 LRR_1 537-559 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 610-630 aa PF00560 LRR_1 633-655 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 874-1040 aa PF07714 PK_Tyr_Ser-Thr 875-1024 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799490.1 Pfam PF08263 LRRNT_2 Family 33 68 9.7e-06 26.5 Leucine rich repeat N-terminal domain
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 145 167 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 169 191 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF13855 LRR_8 Repeat 246 301 1.9e-47 159.6 Leucine rich repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 267 288 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 290 312 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 365 385 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF13855 LRR_8 Repeat 365 422 1.9e-47 159.6 Leucine rich repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 387 408 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 460 482 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 537 559 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 586 607 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 610 630 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 633 655 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 705 727 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00560 LRR_1 Repeat 729 750 9.1e-57 177.4 Leucine Rich Repeat
XP_057799490.1 Pfam PF00069 Pkinase Domain 874 1040 2.1e-28 100.2 Protein kinase domain
XP_057799490.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 875 1024 6.5e-26 91.9 Protein tyrosine and serine/threonine kinase
XP_057799491.1 Pfam PF08263 LRRNT_2 Family 33 68 9.7e-06 26.5 Leucine rich repeat N-terminal domain
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 145 167 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 169 191 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF13855 LRR_8 Repeat 246 301 1.9e-47 159.6 Leucine rich repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 267 288 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 290 312 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 365 385 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF13855 LRR_8 Repeat 365 422 1.9e-47 159.6 Leucine rich repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 387 408 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 460 482 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 537 559 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 586 607 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 610 630 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 633 655 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 705 727 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00560 LRR_1 Repeat 729 750 9.1e-57 177.4 Leucine Rich Repeat
XP_057799491.1 Pfam PF00069 Pkinase Domain 874 1040 2.1e-28 100.2 Protein kinase domain
XP_057799491.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 875 1024 6.5e-26 91.9 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057943508.1
GTATATCTCAGTCTCATTAAGTGACTGGGGTCGACATTTGTATGGATCACTACGAGAGAGTAGGTATGGAAAACTCTCAAGTCAAGCAAGTCTTGTAATATTTGTGTATATATGATCGTTGCAGTTATTAGGGACTTATCATAATACATTAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGC...
XM_057943507.1
TCATTAAGTGACTGGGGTCGACATTTGTATGGATCACTACGAGAGAGTAGGTATGGAAAACTCTCAAGTCAAGCAAGTCTTGTAATATTTGTGTATATATGATCGTTGCAGTTATTAGGGACTTATCATAATACATTAATCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATC...

CDS

2 records

下载 CDS FASTA
LOC131015219
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATTCATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...
LOC131015219
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCTTCTGAATCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATTCATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

2 records

下载 Protein FASTA
XP_057799490.1
MEKKLYCILPYAFLITITFPMLSSESKQPLSLATDQTALLSLKHSSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLSLRNNSFIGSIPKSLSNLTNLQFLDLTSNSLSGEIPKELGRLQSLQTLYVHINHLSGAIPSAIFNISTLVAIALGNNELSGSLPTDMCSNLPFLAGIYLSQNQLSGAIPTN...
XP_057799491.1
MEKKLYCILPYAFLITITFPMLSSESKQPLSLATDQTALLSLKHSSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLSNNLFHGDLPQELSLLRRLKFISFRLNNFTGDIPPMLGQLPKLEYLSLRNNSFIGSIPKSLSNLTNLQFLDLTSNSLSGEIPKELGRLQSLQTLYVHINHLSGAIPSAIFNISTLVAIALGNNELSGSLPTDMCSNLPFLAGIYLSQNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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