Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004405

染色体: Chr03 坐标: 62221088-62224231 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004405
名称SmilChr03G004405
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向62221088 - 62224231 / +

ID 对照

NCBI Gene IDLOC131015243
GeneID131015243
locus_tag-
NCBI NameLOC131015243
原始查询SmilChr03G004405

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT3G47090 (AT3G47090)
Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823862]
identity=36.4; qcov=1.06; evalue=1.02e-125; confidence=medium
RiceOs11g0208900
-
identity=41.8; qcov=0.993; evalue=1.02e-141; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015243

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799530.1
2 Nucleus 细胞核 0.00000 XP_057799530.1
3 Chromosome 染色体 0.00000 XP_057799530.1
4 Centromere 着丝粒 0.00000 XP_057799530.1
5 Chromatin 染色质 0.00000 XP_057799530.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057799530.1
607 aa
N
1
304
607
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF13855 LRR_8 2-58 aa PF00560 LRR_1 24-45 aa PF00560 LRR_1 48-68 aa PF00560 LRR_1 96-117 aa PF00560 LRR_1 143-165 aa PF00560 LRR_1 167-189 aa PF00069 Pkinase 312-577 aa PF07714 PK_Tyr_Ser-Thr 314-580 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799530.1 Pfam PF13855 LRR_8 Repeat 2 58 5.1e-18 65.3 Leucine rich repeat
XP_057799530.1 Pfam PF00560 LRR_1 Repeat 24 45 4.6e-22 74.1 Leucine Rich Repeat
XP_057799530.1 Pfam PF00560 LRR_1 Repeat 48 68 4.6e-22 74.1 Leucine Rich Repeat
XP_057799530.1 Pfam PF00560 LRR_1 Repeat 96 117 4.6e-22 74.1 Leucine Rich Repeat
XP_057799530.1 Pfam PF00560 LRR_1 Repeat 143 165 4.6e-22 74.1 Leucine Rich Repeat
XP_057799530.1 Pfam PF00560 LRR_1 Repeat 167 189 4.6e-22 74.1 Leucine Rich Repeat
XP_057799530.1 Pfam PF00069 Pkinase Domain 312 577 3.5e-40 138.8 Protein kinase domain
XP_057799530.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 314 580 3.7e-39 135.3 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943547.1
TCATGTGTTTTTAGCTACAGTTTTGAAATCTCATCTTTTGCAGGGCTTATTCCCACTGAATTTGGCCAACTTTACCATTTGGAGACATTATACCTACAATTGAACAGCTTGAGTGGTTCGATTCCACATGAGCTCTTTAACATTTCAACTCTTCGGATTCTTGCAATTAACAACAATGCCCTGTCAGGGGTTCTTCCAACCCATTTATGCCATGCCTCTCCCTTTCTCGAAGAACTTTATCTTGCCATAAATTCTATCAC...

CDS

1 records

下载 CDS FASTA
LOC131015243
ATGATATTGGAGTTGTCAGCAAATGAGTTATCTGGTAATATTCCACCAACTATAAGCCATTTGCATCAACTTCAAGGATTAGATCTATCTCACAACATGTTGGGAGGCTCAATACCACATGCTATATGTGATCTATTCCGCCTCGACACTTTAGTTATGAGCCACAATCAATTTTCAGGCCCAATTCCTAAATGTCTGGAAAATGTCTCTTCTATAAGAATTCTTCATCTAGGCTCCAACATGTTGAATTCAAGCATACC...

Protein

1 records

下载 Protein FASTA
XP_057799530.1
MILELSANELSGNIPPTISHLHQLQGLDLSHNMLGGSIPHAICDLFRLDTLVMSHNQFSGPIPKCLENVSSIRILHLGSNMLNSSIPSSLWGLKDLNSLDLSSNSLNGFLPQEISNLGAAIHINLSMNQLSKSIPSTIGKLQNLINLSLANNRLEGSIPVSMGSMINLANLDLSYNNLSGSIPKSLEELQHLDSFNVSFNSLSGEIPNEGSFRNFTTYCFKGNEALCGIPKFHVQICSSITNHRSKRKKVERASFIVFGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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