Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004406`

染色体: Chr03 坐标: 62224399-62226533 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004406`
名称	SmilChr03G004406
描述	uncharacterized SmilChr03G004406
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62224399 - 62226533 / `-`

ID 对照

NCBI Gene ID	`LOC131015282`
GeneID	`131015282`
locus_tag	`-`
NCBI Name	`LOC131015282`
原始查询	`SmilChr03G004406`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430]; symbol=AT2G05642; hit=AT2G05642; species=arabidopsis; confidence=low
产物	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430]; symbol=AT2G05642; hit=AT2G05642; species=arabidopsis; confidence=low
Arabidopsis	`AT2G05642` (AT2G05642) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430] identity=25.5; qcov=0.807; evalue=1.4e-12; confidence=low
Rice	`Os07g0190600` - identity=23.5; qcov=0.876; evalue=6.66e-12; confidence=weak
GO	GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006281 (DNA repair); GO:0006310 (DNA recombination)
KEGG	-
Pfam	PF08646 (Rep_fac-A_C)
InterPro	-
eggNOG	-
NR	GeneID:131015282

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799611.1`
2	Telomere	端粒	0.20000	`XP_057799611.1`
3	Chromosome	染色体	0.00000	`XP_057799612.1`
4	Centromere	着丝粒	0.00000	`XP_057799612.1`
5	Chromatin	染色质	0.00000	`XP_057799612.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62224520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr3:62224564`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B38,C13
`Chr3:62224564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,C13
`Chr3:62224569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B112,B29,C69,D6
`Chr3:62224650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C13
`Chr3:62224790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B29,B54,B62,C11
`Chr3:62224846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:62224849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr3:62224931`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B65
`Chr3:62224931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:62224985`	`A`	`AC`	1bp_insertion	frameshift_variant	2	B47,C14
`Chr3:62224985`	`A`	`AC`	1bp_insertion	CDS_variant	2	B47,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799611.1

348 aa

174

348

Rep_fac-A_C

PF08646 Rep_fac-A_C 218-328 aa

XP_057799612.1

233 aa

116

233

Rep_fac-A_C

PF08646 Rep_fac-A_C 103-213 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799611.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	218	328	1.3e-11	45.1	Replication factor-A C terminal domain
`XP_057799612.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	103	213	6.2e-12	46.2	Replication factor-A C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943628.1
GTTTGAGAAATGTGCCGATCTTCTATGCATTTTCTACCTTTGGTTTATTAAATAAAGTTTCTATTATTTATATTGGTTAAAGTTCGTAAACTTTCTAATATAGAATAACAATGTTGGTTTATATTGTTGATGTGCCGATCTTCTAAATTAATTTGGATTTATTGCACGTGTTGTTACAGTTTCATTATATTGAAAAACTTTAATGATGGGGATGTGGTCACTCTTCAACGAGCTTCACCCTTTGTCAATGACACCTACAG...

XM_057943629.1
GTTTGAGAAATGTGCCGATCTTCTATGCATTTTCTACCTTTGGTTTATTAAATAAAGTTTCTATTATTTATATTGGTTAAAGTTCGTAAACTTTCTAATATAGAATAACAATGTTGGTTTATATTGTTGATGTGCCGATCTTCTAAATTAATTTGGATTTATTGCACGTGTTGTTACAGTTTCATTATATTGAAAAACTTTAATGATGGGGATGTGGTCACTCTTCAACGAGCTTCACCCTTTGTCAATGACACCTACAG...

CDS

2 records

下载 CDS FASTA

LOC131015282
ATGCTATACGGAACTTCGGTGTTACACATAATCAATCAAAGTTTAGAGTTACGTCACATAAGTACAAAGCAACTTTTTATGGAAACACACAAGTTAGAGTTGAAACTAATACAATGTTTCCTAATATCATTTATGCATTCACGACCTTTTTATATACGCTACAAACTCTTAGTTATGACGTATGTGGCTCGTGCAGATATTATAGGCAAAGTCGCCTCGAAGCCTAATCCAACAAAACAGATAACTCGAGATGGTAAAGA...

LOC131015282
ATGAATCAATATGAAGAACGCCAAATGGATGTCAACGTTATTGTATTACAATTTTGCAGCCTAAGTATGTTTCGAGGTACTGTAAAAGTGCAAAGTAGATATCAAGTTACTAAAATTTTGTTGAATGAAGATATACCTGACATACATGAATTCAAGCAGAGACTTATTCATTCTGGCTTAAGCACTATGGTTATTTCAAACACTTCACAATCAATAAGCTCAACTGTTATTGATGAGCTTGAAGATGGAGTCACCGTGAC...

Protein

2 records

下载 Protein FASTA

XP_057799611.1
MLYGTSVLHIINQSLELRHISTKQLFMETHKLELKLIQCFLISFMHSRPFYIRYKLLVMTYVARADIIGKVASKPNPTKQITRDGKEKKTLDLTLIDIEGKTISCTLWDNYVDIFMNQYEERQMDVNVIVLQFCSLSMFRGTVKVQSRYQVTKILLNEDIPDIHEFKQRLIHSGLSTMVISNTSQSISSTVIDELEDGVTVTTIKELCENSEGGSFWICGTVVNIDKERGWFYLSCKKCYRQVEKVEKQFYCKYCNSFNE...

XP_057799612.1
MNQYEERQMDVNVIVLQFCSLSMFRGTVKVQSRYQVTKILLNEDIPDIHEFKQRLIHSGLSTMVISNTSQSISSTVIDELEDGVTVTTIKELCENSEGGSFWICGTVVNIDKERGWFYLSCKKCYRQVEKVEKQFYCKYCNSFNESAEMKYKLIINIVDDSGSSPIILWDKEIKQVIGKSAAEVNVEGAEEFVVPKEIQDVLLQEKFMFKIKVPFGEGWAFNRAYNVLCDSIN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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