Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004409`

染色体: Chr03 坐标: 62248648-62258602 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004409`
名称	SmilChr03G004409
描述	uncharacterized SmilChr03G004409
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62248648 - 62258602 / `+`

ID 对照

NCBI Gene ID	`LOC131015279`
GeneID	`131015279`
locus_tag	`-`
NCBI Name	`LOC131015279`
原始查询	`SmilChr03G004409`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0315200; species=rice; confidence=medium
产物	hit=Os08g0315200; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os08g0315200` - identity=35.7; qcov=0.475; evalue=1.31e-28; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF19259 (Ty3_capsid)
InterPro	-
eggNOG	-
NR	GeneID:131015279

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057799599.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799599.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057799599.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057799599.1`
5	Cytosol	细胞质基质	0.20000	`XP_057799599.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799599.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

XP_057799601.1

354 aa

177

354

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 49-211 aa PF03732 PEG10_N-capsid 50-128 aa PF00098 zf-CCHC 309-325 aa

XP_057799602.1

354 aa

177

354

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 49-211 aa PF03732 PEG10_N-capsid 50-128 aa PF00098 zf-CCHC 309-325 aa

XP_057799603.1

367 aa

184

367

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 62-224 aa PF03732 PEG10_N-capsid 63-141 aa PF00098 zf-CCHC 322-338 aa

XP_057799604.1

354 aa

177

354

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 49-211 aa PF03732 PEG10_N-capsid 50-128 aa PF00098 zf-CCHC 309-325 aa

XP_057799605.1

354 aa

177

354

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 49-211 aa PF03732 PEG10_N-capsid 50-128 aa PF00098 zf-CCHC 309-325 aa

XP_057799606.1

354 aa

177

354

Ty3_capsid

PEG10_N-capsid

zf-CCHC

PF19259 Ty3_capsid 49-211 aa PF03732 PEG10_N-capsid 50-128 aa PF00098 zf-CCHC 309-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799599.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.5e-08	35.0	Ty3 transposon capsid-like protein
`XP_057799599.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.4e-14	53.0	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799599.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle
`XP_057799601.1`	Pfam	`PF19259`	Ty3_capsid	Domain	49	211	1.4e-08	35.1	Ty3 transposon capsid-like protein
`XP_057799601.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	50	128	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799601.1`	Pfam	`PF00098`	zf-CCHC	Domain	309	325	9.7e-06	26.2	Zinc knuckle
`XP_057799602.1`	Pfam	`PF19259`	Ty3_capsid	Domain	49	211	1.4e-08	35.1	Ty3 transposon capsid-like protein
`XP_057799602.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	50	128	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799602.1`	Pfam	`PF00098`	zf-CCHC	Domain	309	325	9.7e-06	26.2	Zinc knuckle
`XP_057799603.1`	Pfam	`PF19259`	Ty3_capsid	Domain	62	224	1.5e-08	35.0	Ty3 transposon capsid-like protein
`XP_057799603.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	63	141	5.4e-14	53.0	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799603.1`	Pfam	`PF00098`	zf-CCHC	Domain	322	338	1e-05	26.1	Zinc knuckle
`XP_057799604.1`	Pfam	`PF19259`	Ty3_capsid	Domain	49	211	1.4e-08	35.1	Ty3 transposon capsid-like protein
`XP_057799604.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	50	128	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799604.1`	Pfam	`PF00098`	zf-CCHC	Domain	309	325	9.7e-06	26.2	Zinc knuckle
`XP_057799605.1`	Pfam	`PF19259`	Ty3_capsid	Domain	49	211	1.4e-08	35.1	Ty3 transposon capsid-like protein
`XP_057799605.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	50	128	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799605.1`	Pfam	`PF00098`	zf-CCHC	Domain	309	325	9.7e-06	26.2	Zinc knuckle
`XP_057799606.1`	Pfam	`PF19259`	Ty3_capsid	Domain	49	211	1.4e-08	35.1	Ty3 transposon capsid-like protein
`XP_057799606.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	50	128	5.1e-14	53.1	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057799606.1`	Pfam	`PF00098`	zf-CCHC	Domain	309	325	9.7e-06	26.2	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057943621.1
GTAAAACTAGTAAATGCAATTTTTATAAATGAATCCAGTTTATGGTCCTGATTTTTTTTATCAGAAACGGAGTTATTATTTTAGCTTTATACTTTTATAACGTATGAGAAAAACGCGACGAGGATTATTGAGCCATTCAATAATTTATTATCCAGTTTAATAACTGACTTAGCAAAGTCAAGTTATTAATAGAAATATTATTTCTATTATTTACTTGGAAGTCGTGATCTAATTCCGAATCATAAGAACGAGTTAAATTA...

XM_057943618.1
GTAAAACTAGTAAATGCAATTTTTATAAATGAATCCAGTTTATGGTCCTGATTTTTTTTATCAGAAACGGAGTTATTATTTTAGCTTTATACTTTTATAACGTATGAGAAAAACGCGACGAGGATTATTGAGCCATTCAATAATTTATTATCCAGTTTAATAACTGACTTAGCAAAGTCAAGTTATTAATAGAAATATTATTTCTATTATTTACTTGGAAGTCGTGATCTAATTCCGAATCATAAGAACGAGTTAAATTA...

CDS

7 records

下载 CDS FASTA

LOC131015279
ATGCTAGAGTGTACTAATTGGCACATCTTTGCTATCAGAATGCCGCCTAAGAGAGGACGCCCTGCGAAAAACAATAACAATCGCAGAAACCGTAACGCTGTACCCGAAGAACCACAAGATGCTCGAGGACATAACCCATCCCCTCCGCCTCCGACTAGGAGAGTCGAAGAACTCTTTTTAAGGCAAAATCCACCTACGTTTGACGGAACGAGTGAACCGGCTGAAGCTGAGATTTGGGTGCGTGCAATGGAACGCATTTT...

Protein

7 records

下载 Protein FASTA

XP_057799599.1
MLECTNWHIFAIRMPPKRGRPAKNNNNRRNRNAVPEEPQDARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGNKSVVEYDKEFCNLSRFAPQQVDTDEKMAEKFCAGLRYEIKMALASHGGLSYTESLNRALDIEAAMPSDKSAPPLISMPNDPPVASHTLKGKRKWDNNED...

XP_057799601.1
MPPKRGRPAKNNNNRRNRNAVPEEPQDARGHNPSPPPPTRRVEELFLRQNPPTFDGTSEPAEAEIWVRAMERIFNFLRCTDEERLSCVSFQLTGSADFWWEARRKILTPEQWASYTWEDFKTGLYDKYIPKSYRKKKEAEFYELKQGNKSVVEYDKEFCNLSRFAPQQVDTDEKMAEKFCAGLRYEIKMALASHGGLSYTESLNRALDIEAAMPSDKSAPPLISMPNDPPVASHTLKGKRKWDNNEDNINQTSKKVWQEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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