Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004410`

染色体: Chr03 坐标: 62264461-62275306 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004410`
名称	SmilChr03G004410
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62264461 - 62275306 / `+`

ID 对照

NCBI Gene ID	`LOC131019135`
GeneID	`131019135`
locus_tag	`-`
NCBI Name	`LOC131019135`
原始查询	`SmilChr03G004410`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物	probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis	`AT3G47090` (AT3G47090) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823862] identity=35.1; qcov=0.459; evalue=1.72e-94; confidence=medium
Rice	`Os11g0208900` - identity=33.5; qcov=0.823; evalue=5.99e-144; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019135

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803804.1`
2	Nucleus	细胞核	0.00000	`XP_057803804.1`
3	Chromosome	染色体	0.00000	`XP_057803804.1`
4	Centromere	着丝粒	0.00000	`XP_057803804.1`
5	Chromatin	染色质	0.00000	`XP_057803804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62264828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B89,B93,C53
`Chr3:62264845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C29
`Chr3:62264849`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B131
`Chr3:62264849`	`C`	`CA`	1bp_insertion	CDS_variant	1	B131
`Chr3:62264858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr3:62264864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr3:62267253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr3:62267264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,C16,C50
`Chr3:62267265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,C16,C50
`Chr3:62267287`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B32
`Chr3:62267287`	`CT`	`C`	1bp_deletion	CDS_variant	1	B32
`Chr3:62267321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B125,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803804.1

1243 aa

622

1243

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

LRR_1

PF00560 LRR_1 111-132 aa PF13855 LRR_8 111-169 aa PF13855 LRR_8 182-242 aa PF00560 LRR_1 183-205 aa PF00560 LRR_1 208-229 aa PF00560 LRR_1 259-281 aa PF00560 LRR_1 569-590 aa PF00560 LRR_1 616-638 aa PF00560 LRR_1 640-661 aa PF00069 Pkinase 740-1008 aa PF07714 PK_Tyr_Ser-Thr 742-1011 aa PF00560 LRR_1 1042-1063 aa PF00560 LRR_1 1113-1133 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	111	132	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF13855`	LRR_8	Repeat	111	169	4.5e-34	116.7	Leucine rich repeat
`XP_057803804.1`	Pfam	`PF13855`	LRR_8	Repeat	182	242	4.5e-34	116.7	Leucine rich repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	183	205	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	208	229	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	259	281	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	569	590	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	616	638	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	640	661	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00069`	Pkinase	Domain	740	1008	1.2e-38	133.8	Protein kinase domain
`XP_057803804.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	742	1011	2.2e-38	132.8	Protein tyrosine and serine/threonine kinase
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	1042	1063	1.4e-38	123.2	Leucine Rich Repeat
`XP_057803804.1`	Pfam	`PF00560`	LRR_1	Repeat	1113	1133	1.4e-38	123.2	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947821.1
ATGGTTGACAAAGAGAGAAAAAGAGCTCATACTCAACAGAAACTCTCTGATATAAAGGAAGCATTCGACGAGATCGAGTATAAAATACCATATAATTTTGTGGAGTTCAACGATGTGGAACAAAAGCTTGACAAGGAAGAAGAGTTTGGAATACTACCACATGAGATTGGCCATTTTCAGAATCTGGTTACTTTTGATGCTGGACATAATGAGATTGCAGGCTCAATTGATTTCAATATTTTCATGAATATGTCTGCTCT...

CDS

1 records

下载 CDS FASTA

LOC131019135
ATGGTTGACAAAGAGAGAAAAAGAGCTCATACTCAACAGAAACTCTCTGATATAAAGGAAGCATTCGACGAGATCGAGTATAAAATACCATATAATTTTGTGGAGTTCAACGATGTGGAACAAAAGCTTGACAAGGAAGAAGAGTTTGGAATACTACCACATGAGATTGGCCATTTTCAGAATCTGGTTACTTTTGATGCTGGACATAATGAGATTGCAGGCTCAATTGATTTCAATATTTTCATGAATATGTCTGCTCT...

Protein

1 records

下载 Protein FASTA

XP_057803804.1
MVDKERKRAHTQQKLSDIKEAFDEIEYKIPYNFVEFNDVEQKLDKEEEFGILPHEIGHFQNLVTFDAGHNEIAGSIDFNIFMNMSALQTIYLGHNKFTGNLLRDVGNITMLTELYLQENHFTGLIPAEFGQLYHLSTLLLRRNSLSGSIPHELFNISTLRILGLVENALSGVLPTHLCHGSPSLERLYLGNNSISGAIPNSISNCSQLIYLSLSDNKFSGYIPTHLGNLRQLQSLQLFSNNLTQAPSSSFITSLTNCKSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器