Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004413`

染色体: Chr03 坐标: 62305021-62305953 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004413`
名称	SmilChr03G004413
描述	LRR receptor-like serine/threonine-protein kinase GSO1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62305021 - 62305953 / `+`

ID 对照

NCBI Gene ID	`LOC131019137`
GeneID	`131019137`
locus_tag	`-`
NCBI Name	`LOC131019137`
原始查询	`SmilChr03G004413`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LRR receptor-like serine/threonine-protein kinase GSO1
产物	LRR receptor-like serine/threonine-protein kinase GSO1
Arabidopsis	`AT3G47110` (AT3G47110) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823864] identity=35.6; qcov=0.997; evalue=1.48e-47; confidence=medium
Rice	`Os11g0490200` - identity=42.1; qcov=0.958; evalue=6.14e-60; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8); PF23211 (LRR_LRWD1); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131019137

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803806.1`
2	Nucleus	细胞核	0.00000	`XP_057803806.1`
3	Chromosome	染色体	0.00000	`XP_057803806.1`
4	Centromere	着丝粒	0.00000	`XP_057803806.1`
5	Chromatin	染色质	0.00000	`XP_057803806.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62305065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B36,B49,B80
`Chr3:62305084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:62305212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B82
`Chr3:62305233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:62305275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr3:62305281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr3:62305301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B119,B12,C30
`Chr3:62305372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B115,C2,C24,C63
`Chr3:62305401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:62305416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:62305451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:62305484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C13,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803806.1

310 aa

155

310

LRRNT_2

LRR_LRWD1

LRR_4

LRR_1

LRR_8

LRR_1

LRR_14

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 33-68 aa PF23211 LRR_LRWD1 70-158 aa PF12799 LRR_4 121-161 aa PF00560 LRR_1 122-143 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF23598 LRR_14 162-274 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF13855 LRR_8 193-253 aa PF13855 LRR_8 241-301 aa PF00560 LRR_1 242-264 aa PF00560 LRR_1 266-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803806.1`	Pfam	`PF08263`	LRRNT_2	Family	33	68	1.9e-06	28.7	Leucine rich repeat N-terminal domain
`XP_057803806.1`	Pfam	`PF23211`	LRR_LRWD1	Repeat	70	158	1.5e-08	35.3	Leucine-rich repeat and WD repeat-containing protein 1, LRR
`XP_057803806.1`	Pfam	`PF12799`	LRR_4	Repeat	121	161	5e-22	78.1	Leucine Rich repeats (2 copies)
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	122	143	2.5e-28	92.7	Leucine Rich Repeat
`XP_057803806.1`	Pfam	`PF13855`	LRR_8	Repeat	144	204	1.3e-24	86.5	Leucine rich repeat
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	2.5e-28	92.7	Leucine Rich Repeat
`XP_057803806.1`	Pfam	`PF23598`	LRR_14	Repeat	162	274	1.4e-21	77.4	Leucine-rich repeat region
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	2.5e-28	92.7	Leucine Rich Repeat
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	193	214	2.5e-28	92.7	Leucine Rich Repeat
`XP_057803806.1`	Pfam	`PF13855`	LRR_8	Repeat	193	253	1.3e-24	86.5	Leucine rich repeat
`XP_057803806.1`	Pfam	`PF13855`	LRR_8	Repeat	241	301	1.3e-24	86.5	Leucine rich repeat
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	242	264	2.5e-28	92.7	Leucine Rich Repeat
`XP_057803806.1`	Pfam	`PF00560`	LRR_1	Repeat	266	288	2.5e-28	92.7	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947823.1
ATGGACAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTATGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCATAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTTCGCCAC...

CDS

1 records

下载 CDS FASTA

LOC131019137
ATGGACAAAAAGCTTTATTGCATTTTGCAGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAACAACCTATGAGTCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTGCGCCACCATAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTTCGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057803806.1
MDKKLYCILQYAFLITITFPMLSSEAKQPMSLATDQTALLSLKHTSLLLATNWTNSTSVCSWIGVTCSLRHHRVAALNLSNMALFATIPPQLGRLSFLVSLDLTNNLFHGDLPHELSLLRRLKFISLRLNNFTGDIPPMLGQLPKLEYLSLRNNSFIGSIPKSLSNLTNLQFLDLRSNSLSGEIPKEFGRLQSLQTLYVQRNHLSGAIPSAIFNISTLVSMGFTYNELSGSLPTDMCRNLPSLTGLYLSKNQLSGTIPSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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