Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004416`

染色体: Chr03 坐标: 62320607-62323324 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004416`
名称	SmilChr03G004416
描述	FCS-Like Zinc finger 10-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62320607 - 62323324 / `-`

ID 对照

NCBI Gene ID	`LOC131015270`
GeneID	`131015270`
locus_tag	`-`
NCBI Name	`LOC131015270`
原始查询	`SmilChr03G004416`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FCS-Like Zinc finger 10-like
产物	FCS-Like Zinc finger 10-like
Arabidopsis	`AT5G11460` (AT5G11460) - identity=38.2; qcov=0.868; evalue=4.1e-44; confidence=medium
Rice	`Os01g0180400` - identity=50; qcov=0.323; evalue=2.07e-30; confidence=low
GO	-
KEGG	-
Pfam	PF04570 (zf-FLZ)
InterPro	-
eggNOG	-
NR	GeneID:131015270

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799572.1`
2	Cytoplasm	细胞质	1.00000	`XP_057799573.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799572.1`
4	Chromosome	染色体	0.00000	`XP_057799573.1`
5	Centromere	着丝粒	0.00000	`XP_057799573.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62321056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:62321072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:62321082`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B43
`Chr3:62321082`	`CA`	`C`	1bp_deletion	CDS_variant	1	B43
`Chr3:62321098`	`C`	`CAG`	2bp_insertion	frameshift_variant	84	A1,A14,A19,A21,A22,A24,A3,A7,B1,B10,B102,B103,B104,B107,B108,B110,B112,B118,B128,B131,B133,B138,B139,B17,B18,B19,B25,B26,B29,B3,B37,B45,B54,B55,B58,B59,B6,B60,B61,B62,B63,B65,B67,B69,B7,B72,B73,B8,B80,B82,B84,B87,B9,C12,C13,C15,C16,C18,C24,C25,C30,C32,C37,C40,C46,C49,C5,C50,C51,C54,C55,C6,C61,C63,C67,C68,C72,C76,C78,C83,C86,C9,D2,D8
`Chr3:62321136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr3:62321229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C37,D10
`Chr3:62321249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B12,B83
`Chr3:62321266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:62321294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B61,B81
`Chr3:62321385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:62321465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799572.1

405 aa

202

405

zf-FLZ

PF04570 zf-FLZ 319-345 aa PF04570 zf-FLZ 364-399 aa

XP_057799573.1

371 aa

186

371

zf-FLZ

PF04570 zf-FLZ 319-365 aa

XP_057799574.1

371 aa

186

371

zf-FLZ

PF04570 zf-FLZ 319-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799572.1`	Pfam	`PF04570`	zf-FLZ	Domain	319	345	6.2e-14	51.9	zinc-finger of the FCS-type, C2-C2
`XP_057799572.1`	Pfam	`PF04570`	zf-FLZ	Domain	364	399	6.2e-14	51.9	zinc-finger of the FCS-type, C2-C2
`XP_057799573.1`	Pfam	`PF04570`	zf-FLZ	Domain	319	365	3.3e-21	75.2	zinc-finger of the FCS-type, C2-C2
`XP_057799574.1`	Pfam	`PF04570`	zf-FLZ	Domain	319	365	3.3e-21	75.2	zinc-finger of the FCS-type, C2-C2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943591.1
TAATGCCATGTGTAAAATCACAGGTGAGAGAAAAAAGAGAGAGAAAAGAGTATTTGAGAAGCTCATTGCTTCTCTGATTTTGATGCTAGAGAGAGAGAGAGGAGAGAGAGAGGGTGTACTGTACAAGGTTCACAACACACACACACACACAAGATAAAGACAGGAGAAGGGTCTCCATTTCTCCCCCACTGCATTTGGGTTTTTCCTTCATCTCACTCAAACCACATTTCTCTCAAGTTTCGAGAGATAGAGAGAGAGAG...

XM_057943589.1
GTGTAAAATCACAGGTGAGAGAAAAAAGAGAGAGAAAAGAGTATTTGAGAAGCTCATTGCTTCTCTGATTTTGATGCTAGAGAGAGAGAGAGGAGAGAGAGAGGGTGTACTGTACAAGGTTCACAACACACACACACACACAAGATAAAGACAGGAGAAGGGTCTCCATTTCTCCCCCACTGCATTTGGGTTTTTCCTTCATCTCACTCAAACCACATTTCTCTCAAGTTTCGAGAGATAGAGAGAGAGAGAGAGCAAGC...

CDS

3 records

下载 CDS FASTA

LOC131015270
ATGCTGAGGAAGAGAACTAGATCACACCAAAAAGATCAAAACATGAATAATACAATACCTGATTCTATGTATATTCACTCCGATGAGAAGCGTAAAGATAACTCCCTTTTGAAGGTTCCTGGCTTGTTTGTGGGATTCAATGCCAGGAGCTCAGATTCTGATTCAGTGAGAAGCCCCACTTCGCCGTTAGATTTTAGGATTTTTTCGAGTTTAGGCAATCCCTTTAGGTGTCTAAGAGCACAGAATGAGGGGCACCACAA...

Protein

3 records

下载 Protein FASTA

XP_057799572.1
MLRKRTRSHQKDQNMNNTIPDSMYIHSDEKRKDNSLLKVPGLFVGFNARSSDSDSVRSPTSPLDFRIFSSLGNPFRCLRAQNEGHHKSWDCSKVGLSIIDSLDHELGETGKSIARPSDHRNILFGRQMSVRSPTFCSLEAPKSLPKDVAVFPSTLAKPANARKRDSDVVFEIGEAPFEQEASGSFRARSVDSGRYGSHLTNFRNLKSRFGSGSFGVENATSPARSGVGMSPRLGSSSGEKLSPPGNCFISSIPASEIELS...

XP_057799573.1
MLRKRTRSHQKDQNMNNTIPDSMYIHSDEKRKDNSLLKVPGLFVGFNARSSDSDSVRSPTSPLDFRIFSSLGNPFRCLRAQNEGHHKSWDCSKVGLSIIDSLDHELGETGKSIARPSDHRNILFGRQMSVRSPTFCSLEAPKSLPKDVAVFPSTLAKPANARKRDSDVVFEIGEAPFEQEASGSFRARSVDSGRYGSHLTNFRNLKSRFGSGSFGVENATSPARSGVGMSPRLGSSSGEKLSPPGNCFISSIPASEIELS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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