当前解析结果
SmilChr03G004429| 统一新 Gene ID | SmilChr03G004429 |
|---|---|
| 名称 | SmilChr03G004429 |
| 描述 | sulfite exporter TauE/SafE family protein 3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62425990 - 62429989 / - |
| NCBI Gene ID | LOC131015259 |
|---|---|
| GeneID | 131015259 |
| locus_tag | - |
| NCBI Name | LOC131015259 |
| 原始查询 | SmilChr03G004429 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sulfite exporter TauE/SafE family protein 3 |
| 产物 | sulfite exporter TauE/SafE family protein 3 |
| Arabidopsis | AT2G25737 (AT2G25737)Sulfite exporter TauE/SafE family protein [Source:NCBI gene (formerly Entrezgene);Acc:817116] identity=68.7; qcov=0.985; evalue=0; confidence=high |
| Rice | Os09g0344800- identity=71.4; qcov=0.908; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0016567 (protein ubiquitination); GO:0031464 (Cul4A-RING E3 ubiquitin ligase complex) |
| KEGG | - |
| Pfam | PF01925 (TauE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015259 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799556.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057799556.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057799556.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799556.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799556.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62426381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B78,C62 |
Chr3:62426583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B13,B55 |
Chr3:62426635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B63,C37 |
Chr3:62426826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:62426865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:62426996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr3:62427024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:62427317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,D9 |
Chr3:62427336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:62427605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B11,C58 |
Chr3:62427787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr3:62428067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799556.1PF01925
TauE 57-196 aa
PF01925
TauE 339-443 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799556.1 |
Pfam | PF01925 |
TauE | Family | 57 | 196 | 1.3e-22 | 81.4 | Sulfite exporter TauE/SafE |
XP_057799556.1 |
Pfam | PF01925 |
TauE | Family | 339 | 443 | 1.3e-22 | 81.4 | Sulfite exporter TauE/SafE |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。