当前解析结果
SmilChr03G004432| 统一新 Gene ID | SmilChr03G004432 |
|---|---|
| 名称 | SmilChr03G004432 |
| 描述 | pentatricopeptide repeat-containing protein At2g30780-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62462023 - 62464662 / - |
| NCBI Gene ID | LOC131015263 |
|---|---|
| GeneID | 131015263 |
| locus_tag | - |
| NCBI Name | LOC131015263 |
| 原始查询 | SmilChr03G004432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g30780-like |
| 产物 | pentatricopeptide repeat-containing protein At2g30780-like |
| Arabidopsis | AT5G02860 (AT5G02860)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831761] identity=24; qcov=0.731; evalue=3.1e-14; confidence=weak |
| Rice | Os03g0159700 (OJ1134F05.20)- identity=34.8; qcov=0.916; evalue=4.52e-73; confidence=low |
| GO | GO:0003729 (mRNA binding); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015263 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057799561.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799561.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799561.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799561.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62463075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A3,C33,D3 |
Chr3:62463113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr3:62463115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B11,B127,C58 |
Chr3:62463127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B82,C51,C78,C81 |
Chr3:62463186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:62463207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:62463281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A3,C33,D3 |
Chr3:62463371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:62463554 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B24 |
Chr3:62463554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:62463558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,C57,D7 |
Chr3:62463704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B91,C57,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799561.1PF13812
PPR_3 123-168 aa
PF01535
PPR 161-187 aa
PF01535
PPR 197-219 aa
PF01535
PPR 232-260 aa
PF01535
PPR 339-368 aa
XP_057799562.1PF13812
PPR_3 123-168 aa
PF01535
PPR 161-187 aa
PF01535
PPR 197-219 aa
PF01535
PPR 232-260 aa
PF01535
PPR 339-368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799561.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 123 | 168 | 4.6e-15 | 56.2 | Pentatricopeptide repeat domain |
XP_057799561.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799561.1 |
Pfam | PF01535 |
PPR | Repeat | 197 | 219 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799561.1 |
Pfam | PF01535 |
PPR | Repeat | 232 | 260 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799561.1 |
Pfam | PF01535 |
PPR | Repeat | 339 | 368 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799562.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 123 | 168 | 4.6e-15 | 56.2 | Pentatricopeptide repeat domain |
XP_057799562.1 |
Pfam | PF01535 |
PPR | Repeat | 161 | 187 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799562.1 |
Pfam | PF01535 |
PPR | Repeat | 197 | 219 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799562.1 |
Pfam | PF01535 |
PPR | Repeat | 232 | 260 | 1.7e-16 | 59.9 | PPR repeat |
XP_057799562.1 |
Pfam | PF01535 |
PPR | Repeat | 339 | 368 | 1.7e-16 | 59.9 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。