Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004436`

染色体: Chr03 坐标: 62480806-62484657 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004436`
名称	SmilChr03G004436
描述	uncharacterized SmilChr03G004436
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62480806 - 62484657 / `+`

ID 对照

NCBI Gene ID	`LOC131015238`
GeneID	`131015238`
locus_tag	`-`
NCBI Name	`LOC131015238`
原始查询	`SmilChr03G004436`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SRP72 RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843093]; symbol=AT1G67680; hit=AT1G67680; species=arabidopsis; confidence=high
产物	SRP72 RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843093]; symbol=AT1G67680; hit=AT1G67680; species=arabidopsis; confidence=high
Arabidopsis	`AT1G67680` (AT1G67680) SRP72 RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843093] identity=64.2; qcov=0.994; evalue=0; confidence=high
Rice	`Os01g0889000` - identity=57.6; qcov=0.997; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005786 (signal recognition particle, endoplasmic reticulum targeting); GO:0006614 (SRP-dependent cotranslational protein targeting to membrane); GO:0008312 (7S RNA binding); GO:0043022 (ribosome binding)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF08492 (SRP72); PF12895 (ANAPC3); PF13432 (TPR_16); PF17004 (SRP_TPR_like)
InterPro	-
eggNOG	-
NR	GeneID:131015238

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799522.1`
2	Nucleus	细胞核	0.20000	`XP_057799522.1`
3	Nucleolus	核仁	0.20000	`XP_057799522.1`
4	Chromosome	染色体	0.00000	`XP_057799522.1`
5	Centromere	着丝粒	0.00000	`XP_057799522.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62480972`	`CG`	`C`	1bp_deletion	frameshift_variant	2	A20,B22
`Chr3:62480972`	`CG`	`C`	1bp_deletion	CDS_variant	2	A20,B22
`Chr3:62480977`	`GC`	`G`	1bp_deletion	frameshift_variant	35	A1,A14,A24,A8,B102,B109,B11,B126,B129,B133,B137,B27,B28,B37,B38,B39,B44,B50,B51,B52,B70,B78,B80,C19,C2,C26,C36,C46,C58,C61,C70,C76,C84,D5,D8
`Chr3:62480980`	`GCC`	`G`	2bp_deletion	frameshift_variant	35	A1,A14,A24,A8,B102,B109,B11,B126,B129,B133,B137,B27,B28,B37,B38,B39,B44,B50,B51,B52,B70,B78,B80,C19,C2,C26,C36,C46,C58,C61,C70,C76,C84,D5,D8
`Chr3:62480994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr3:62481223`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:62481271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B122,B59
`Chr3:62481287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr3:62481331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B91,C57,C64,C66
`Chr3:62483068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:62483193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:62483443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B13,B136,B55,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799522.1

657 aa

328

657

SRP_TPR_like

TPR_16

ANAPC3

SRP72

PF17004 SRP_TPR_like 55-152 aa PF13432 TPR_16 59-106 aa PF12895 ANAPC3 63-137 aa PF08492 SRP72 551-598 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799522.1`	Pfam	`PF17004`	SRP_TPR_like	Repeat	55	152	1e-10	42.4	Putative TPR-like repeat
`XP_057799522.1`	Pfam	`PF13432`	TPR_16	Repeat	59	106	9.6e-12	45.8	Tetratricopeptide repeat
`XP_057799522.1`	Pfam	`PF12895`	ANAPC3	Repeat	63	137	1.6e-11	45.0	Anaphase-promoting complex, cyclosome, subunit 3
`XP_057799522.1`	Pfam	`PF08492`	SRP72	Domain	551	598	2.3e-16	60.5	SRP72 RNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943539.1
ATGCAGGAAAAATTAAATTTAATTATACCTCAATATTATGCCGATATATCCCATTTTCCAATTACGTGTCAAAATCTGTAAAACCTCTAATTTCTCTGCATCTCCCTCTCGTCCCCTCCGCCGCCGTGCCAGCAGAAATCGAAGCTCAAAATGGCGCCGAAAGCGGCGGCCGCCGCCGCGGCCCCCACCGTGCCGATTGAAGATCTCTTCACCTCCCTCAATCGCCACATCCAACGCTCCGAATTCCACCTCGCCGTTAG...

CDS

1 records

下载 CDS FASTA

LOC131015238
ATGGCGCCGAAAGCGGCGGCCGCCGCCGCGGCCCCCACCGTGCCGATTGAAGATCTCTTCACCTCCCTCAATCGCCACATCCAACGCTCCGAATTCCACCTCGCCGTTAGGGTATCAGATCAAGTCCTGTCGATTGCGCCGGGAGATGAGGATGCGATTCTGTGTAAAGTCGTGGCTTTGATTAAAAACGACAAGATTGACGATGCATTATCCGCAATTGAAAAATTATCCAAGAAATCTTCAGTAGATTTAACTTTCTT...

Protein

1 records

下载 Protein FASTA

XP_057799522.1
MAPKAAAAAAAPTVPIEDLFTSLNRHIQRSEFHLAVRVSDQVLSIAPGDEDAILCKVVALIKNDKIDDALSAIEKLSKKSSVDLTFFKAYCLYRQNKLDEALATLKGHNGDSAAMLLESQILFRLGKMDACVDVYQNLQKSKIDSLEINFVAALVTAGRATEVQGTIESLRLKPTSSFELAYNVACSLIERNKHQDAEQLLLSARRIGQETLMEENLLDDDIETELAPVAVQLGYVQQVLGNNQEALEAYSTLIKKNLAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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