Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004437`

染色体: Chr03 坐标: 62503412-62506643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004437`
名称	SmilChr03G004437
描述	indole-3-pyruvate monooxygenase YUCCA6
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62503412 - 62506643 / `-`

ID 对照

NCBI Gene ID	`LOC131015268`
GeneID	`131015268`
locus_tag	`-`
NCBI Name	`LOC131015268`
原始查询	`SmilChr03G004437`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	indole-3-pyruvate monooxygenase YUCCA6
产物	indole-3-pyruvate monooxygenase YUCCA6
Arabidopsis	`AT5G25620` (YUC6) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832638] identity=67.8; qcov=0.993; evalue=0; confidence=high
Rice	`Os01g0732700` (YUCCA3) - identity=65.7; qcov=1.01; evalue=0; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0009851 (auxin biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF01494 (FAD_binding_3); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131015268

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057799569.1`
2	Cytosol	细胞质基质	0.40000	`XP_057799569.1`
3	Lipid droplet	脂滴	0.40000	`XP_057799569.1`
4	Nucleus	细胞核	0.00000	`XP_057799569.1`
5	Chromosome	染色体	0.00000	`XP_057799569.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62504040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:62504052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B32,B83,D11
`Chr3:62504364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:62504496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr3:62504565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:62504584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr3:62504607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B32,B83
`Chr3:62504639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,C54,C79,C9,D9
`Chr3:62505563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:62505630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B136,B40,C48,D7
`Chr3:62505674`	`CA`	`C`	1bp_deletion	frameshift_variant	39	A11,A24,A7,B109,B113,B119,B125,B128,B131,B16,B25,B26,B30,B32,B35,B55,B72,B77,B83,B87,B9,B90,B92,C12,C19,C21,C32,C34,C37,C41,C44,C55,C67,C68,C78,C82,C83,D1,D11
`Chr3:62505757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799569.1

425 aa

212

425

FAD_binding_3

Pyr_redox_2

Pyr_redox_3

NAD_binding_8

FMO-like

Lys_Orn_oxgnase

PF01494 FAD_binding_3 31-60 aa PF07992 Pyr_redox_2 31-229 aa PF13738 Pyr_redox_3 31-231 aa PF13450 NAD_binding_8 32-63 aa PF00743 FMO-like 32-387 aa PF13434 Lys_Orn_oxgnase 97-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799569.1`	Pfam	`PF01494`	FAD_binding_3	Domain	31	60	7.2e-06	26.2	FAD binding domain
`XP_057799569.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	31	229	4.9e-13	49.9	Pyridine nucleotide-disulphide oxidoreductase
`XP_057799569.1`	Pfam	`PF13738`	Pyr_redox_3	Family	31	231	3.5e-23	83.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057799569.1`	Pfam	`PF13450`	NAD_binding_8	Domain	32	63	6.6e-06	27.0	NAD(P)-binding Rossmann-like domain
`XP_057799569.1`	Pfam	`PF00743`	FMO-like	Family	32	387	1.6e-24	87.0	Flavin-binding monooxygenase-like
`XP_057799569.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	97	225	1.9e-13	51.0	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943586.1
CAGTTTACCGCTCACTTCTGTATATCGAAAAATCAACTCAAAACTTCTCACTGCTTCAAAATCAACCCTCTCTCTATCTCTCTCTCTCACATATATATATATATATATATATAAGTTTCATGAGCAAAGTAGTGAATATCTCTTTGCTCCAAGTCGTATTTATTCTCGAAATGAATGCTGATTGATCAGCTCATTTTATCCCTTACCTCAGAATATTGAAACACAGATTCAAATTCAATCACTCACAACAACAACAACAC...

CDS

1 records

下载 CDS FASTA

LOC131015268
ATGGATACTGATTACCTGCGGGAGATGGAGGGGAAGGCGGCGCACGACCCCTACCTCCGCAAGCCGGCGCCGCGGGTGGTGGCGGGGCCGCTGATCGTCGGCGCGGGGCCGTCGGGGCTGGCCGCGGCGGCGTGCCTGAAGGAGCGCGGCGTGCCGTCGCTCGTGGTCGAGCGATCCAACTGCATCGCGTCGCTGTGGCAGCTCAAGACCTACGACCGCCTCAAGCTCCACCTCCCGAAGCAGTTCTGCGAGCTCCCGCT...

Protein

1 records

下载 Protein FASTA

XP_057799569.1
MDTDYLREMEGKAAHDPYLRKPAPRVVAGPLIVGAGPSGLAAAACLKERGVPSLVVERSNCIASLWQLKTYDRLKLHLPKQFCELPLMAFPPDFPTYPDKQQFVRYLESYAARFEIRPVFGQAVVSAAYDGKLQMWRVRTAGAGAGAAEEAAEYVCRWLIVATGENAEAVVPRIDGLDGFGGDVVHTSGYKSGTVYEGKRVLVVGCGNSGMEVCLDLCNHNAHPSLVVRDTVHILPREMLGRSTFGLSMWLLKWLPMRLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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