Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004444`

染色体: Chr03 坐标: 62573830-62580339 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004444`
名称	SmilChr03G004444
描述	TOM1-like protein 9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62573830 - 62580339 / `+`

ID 对照

NCBI Gene ID	`LOC131015239`
GeneID	`131015239`
locus_tag	`-`
NCBI Name	`LOC131015239`
原始查询	`SmilChr03G004444`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TOM1-like protein 9
产物	TOM1-like protein 9
Arabidopsis	`AT4G32760` (AT4G32760) ENTH/VHS/GAT family protein [Source:NCBI gene (formerly Entrezgene);Acc:829412] identity=59.4; qcov=0.788; evalue=1.12e-159; confidence=high
Rice	`Os06g0332400` - identity=45.5; qcov=1.12; evalue=6.5e-131; confidence=high
GO	GO:0035091 (phosphatidylinositol binding); GO:0043130 (ubiquitin binding); GO:0043328 (protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway)
KEGG	-
Pfam	PF00790 (VHS); PF03127 (GAT)
InterPro	-
eggNOG	-
NR	GeneID:131015239

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057799523.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799524.1`
3	Vesicle	囊泡	0.80000	`XP_057799523.1`
4	Endosome	内体	0.60000	`XP_057799524.1`
5	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057799523.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62574741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,B58,B68,B94
`Chr3:62575326`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	C77
`Chr3:62575326`	`GAC`	`G`	2bp_deletion	CDS_variant	1	C77
`Chr3:62575374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:62576322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B24,D11
`Chr3:62576720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:62576812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B135,B98,C76
`Chr3:62577387`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:62577388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:62577767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr3:62578515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:62578546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799523.1

655 aa

328

655

VHS

GAT

PF00790 VHS 3-113 aa PF03127 GAT 196-269 aa

XP_057799524.1

623 aa

312

623

VHS

GAT

PF00790 VHS 28-81 aa PF03127 GAT 164-237 aa

XP_057799525.1

581 aa

290

581

GAT

PF03127 GAT 122-195 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799523.1`	Pfam	`PF00790`	VHS	Repeat	3	113	1.2e-31	110.2	VHS domain
`XP_057799523.1`	Pfam	`PF03127`	GAT	Domain	196	269	2.6e-19	69.9	GAT domain
`XP_057799524.1`	Pfam	`PF00790`	VHS	Repeat	28	81	3.7e-10	40.5	VHS domain
`XP_057799524.1`	Pfam	`PF03127`	GAT	Domain	164	237	2.5e-19	70.0	GAT domain
`XP_057799525.1`	Pfam	`PF03127`	GAT	Domain	122	195	2.3e-19	70.1	GAT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943540.1
CGGCGGCGTCAATCATCAATAAAACCCGAACAGCCTCCACGCGTCCCAATCCTATTGGCCCGCCCCATTCAATACTTGACCCCCTAAAATTGATTTTTTTTCGCAATTTTTTTCTCCCTAGATTCTGCAATCCAAAACTAACAGAACTGATTGAAACTAGCGATCGGATCCCCCGAGATAACTATTTTTGTCGCATATTTTTGATTTCGTTAATTATTTCGAAGATTTTTTTCGATTCTCGGGGGAATTTGGTGGGTAGG...

XM_057943542.1
AAAGATGTTGTTCGCGGTATAAAGAAGCGTCTTGGTAGCAGGAATGCGAAAGTTCAGCTGCTTGCCTTAACACTCAGTCAATTGCAAATGTTTTCATTGCATTTTCTAGCTATTGGAGACTGTTGTGAAGAACTGCGGTGATATTGTCCATATGCATGTTGCTGAGAAGGATTTGCCTCATGAGATGGTGAAGATAGTGAAAAAGAAGCCAGACTTCCATGTCAAAGAGAAGATATTGATTCTAATAGATACTTGGCAAG...

CDS

3 records

下载 CDS FASTA

LOC131015239
ATGGTAAATGCTATGGTGGATAGAGCTACGAGCGATATGCTGATCGGGCCGGATTGGGCTATGAATATTGAGATCTGTGATATTTGCAATCACGATCCTGCACAAGCGAAAGATGTTGTTCGCGGTATAAAGAAGCGTCTTGGTAGCAGGAATGCGAAAGTTCAGCTGCTTGCCTTAACACTATTGGAGACTGTTGTGAAGAACTGCGGTGATATTGTCCATATGCATGTTGCTGAGAAGGATTTGCCTCATGAGATGGT...

LOC131015239
ATGACAGCTGGAAAGAAGACACAGAATAAATTGTATTTGTCCTGTGGATTTGGACGGATAAAGTGCGGATTAACATACGGAAGGCTATTGGAGACTGTTGTGAAGAACTGCGGTGATATTGTCCATATGCATGTTGCTGAGAAGGATTTGCCTCATGAGATGGTGAAGATAGTGAAAAAGAAGCCAGACTTCCATGTCAAAGAGAAGATATTGATTCTAATAGATACTTGGCAAGAAGCGTTTGGAGGACCAAGGGGAAG...

Protein

3 records

下载 Protein FASTA

XP_057799523.1
MVNAMVDRATSDMLIGPDWAMNIEICDICNHDPAQAKDVVRGIKKRLGSRNAKVQLLALTLLETVVKNCGDIVHMHVAEKDLPHEMVKIVKKKPDFHVKEKILILIDTWQEAFGGPRGRYPQYYVAYQDLLRLGAVFPQRSERSAPVFTPPQTQPLTSYPPNIRNIEPRADGAEPSAEAEFPTLSLTELQNARGIMDVLTEMLSALDPGNKEGIKQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVL...

XP_057799524.1
MTAGKKTQNKLYLSCGFGRIKCGLTYGRLLETVVKNCGDIVHMHVAEKDLPHEMVKIVKKKPDFHVKEKILILIDTWQEAFGGPRGRYPQYYVAYQDLLRLGAVFPQRSERSAPVFTPPQTQPLTSYPPNIRNIEPRADGAEPSAEAEFPTLSLTELQNARGIMDVLTEMLSALDPGNKEGIKQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHEALASGAAPVQSEKLNPEPTKALVPVDTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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