Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004456

染色体: Chr03 坐标: 62660933-62664423 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004456
名称SmilChr03G004456
描述plant intracellular Ras-group-related LRR protein 6-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向62660933 - 62664423 / +

ID 对照

NCBI Gene IDLOC131015308
GeneID131015308
locus_tag-
NCBI NameLOC131015308
原始查询SmilChr03G004456

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述plant intracellular Ras-group-related LRR protein 6-like
产物plant intracellular Ras-group-related LRR protein 6-like
ArabidopsisAT3G15410 (AT3G15410)
Leucine-rich repeat (LRR) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820780]
identity=51.4; qcov=0.973; evalue=7.73e-21; confidence=medium
RiceOs02g0826600 (OsIRL6)
-
identity=64.2; qcov=0.609; evalue=1.01e-17; confidence=low
GOGO:0005730 (nucleolus); GO:0032040 (small-subunit processome)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131015308

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057799647.1
2 Nucleus 细胞核 0.80000 XP_057799647.1
3 Cytosol 细胞质基质 0.80000 XP_057799647.1
4 Nucleoplasm 核质 0.20000 XP_057799647.1
5 Chromosome 染色体 0.00000 XP_057799647.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:62664224 G A EMS_canonical_SNV CDS_variant 1 C34
Chr3:62664243 C T EMS_canonical_SNV stop_gained 5 B16,B17,C2,C58,C80
Chr3:62664243 C T EMS_canonical_SNV CDS_variant 5 B16,B17,C2,C58,C80
Chr3:62664246 G A EMS_canonical_SNV CDS_variant 1 B57
Chr3:62664251 G A EMS_canonical_SNV CDS_variant 3 B66,C79,D5
Chr3:62664257 G A EMS_canonical_SNV CDS_variant 3 A5,B101,B137
Chr3:62664302 G A EMS_canonical_SNV CDS_variant 3 C58,C75,C80
Chr3:62664303 G A EMS_canonical_SNV CDS_variant 1 C28

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057943666.1
GCTTGAAAAATTGTTGTCTATAACTCAATAGACGACGCGGAATAGGTTGCACGTTGTCTATGAGCGAGAAATCAGACAACATGCATTAAAACACGTAGTCTAATAGGGGAATAGACGACATTTTGCTGGCTCGTCGTCTATAGTAGGCGGTCATAGACAACGCGCGCGAAAATTGTCGTATATTCTATAATAGACGACATCCTCCCCATGTCGTCTATTATTCAAGTTTTGAATCAGATATTTTTTCCTAAGTTTACCTC...
XM_057943667.1
GCTTGAAAAATTGTTGTCTATAACTCAATAGACGACGCGGAATAGGTTGCACGTTGTCTATGAGCGAGAAATCAGACAACATGCATTAAAACACGTAGTCTAATAGGGGAATAGACGACATTTTGCTGGCTCGTCGTCTATAGTAGGCGGTCATAGACAACGCGCGCGAAAATTGTCGTATATTCTATAATAGACGACATCCTCCCCATGTCGTCTATTATTCAAGTTTTGAATCAGATATTTTTTCCTAAGTTTACCTC...

CDS

4 records

下载 CDS FASTA
LOC131015308
ATGATAACACTGCGGAAACTTTTACTCGCTGGTAACCCATTGAGAACACTTCGGAGCTCACTGGTAAATGGACCTACAACTGCTCTGTTGAAGTATCTTCGAAGTAGACTCCCAAAAGATGAAGAGTCTGCAGCACCCTCAGCTGTGAAACAGGACCCTTTTGCTCTAGCTGCTCAGTCATCTCTGACTTCAAAGGTTGATTTGCTATTGGAAAGTGGAGAATATTTCTTAAGTGATCAAACGAATCAAGCAAAGAAGTG...
LOC131015308
ATGATAACACTGCGGAAACTTTTACTCGCTGGTAACCCATTGAGAACACTTCGGAGCTCACTGGTAAATGGACCTACAACTGCTCTGTTGAAGTATCTTCGAAGTAGACTCCCAAAAGATGAAGAGTCTGCAGCACCCTCAGCTGTGAAACAGGACCCTTTTGCTCTAGCTGCTCAGTCATCTCTGACTTCAAAGGTTGATTTGCTATTGGAAAGTGGAGAATATTTCTTAAGTGATCAAACGAATCAAGCAAAGAAGTG...

Protein

4 records

下载 Protein FASTA
XP_057799647.1
MITLRKLLLAGNPLRTLRSSLVNGPTTALLKYLRSRLPKDEESAAPSAVKQDPFALAAQSSLTSKVDLLLESGEYFLSDQTNQAKKWQEKQVKQAAKVTETKRKREEAFL
XP_057799648.1
MITLRKLLLAGNPLRTLRSSLVNGPTTALLKYLRSRLPKDEESAAPSAVKQDPFALAAQSSLTSKVDLLLESGEYFLSDQTNQAKKWQEKQVKQAAKVTETKRKREEAFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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