当前解析结果
SmilChr03G004469| 统一新 Gene ID | SmilChr03G004469 |
|---|---|
| 名称 | SmilChr03G004469 |
| 描述 | wall-associated receptor kinase-like 1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62793370 - 62794589 / - |
| NCBI Gene ID | LOC131019142 |
|---|---|
| GeneID | 131019142 |
| locus_tag | - |
| NCBI Name | LOC131019142 |
| 原始查询 | SmilChr03G004469 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 1 |
| 产物 | wall-associated receptor kinase-like 1 |
| Arabidopsis | AT1G16120 (WAKL1)wall associated kinase-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:838181] identity=49.8; qcov=0.898; evalue=7.48e-95; confidence=high |
| Rice | Os04g0599000 (OsWAK53)- identity=47.9; qcov=0.883; evalue=3.02e-82; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019142 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803811.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803811.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057803811.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803811.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62793477 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | A21,A3,B112,B124,B44,B7,B76,B89,B91,B98,C16,C61,C7,C81,C9,D6 |
Chr3:62793496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:62793534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr3:62793586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C14 |
Chr3:62793591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C24 |
Chr3:62793600 |
C |
CTT |
2bp_insertion | frameshift_variant | 6 | A22,B71,C26,C29,C31,C35 |
Chr3:62793616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,A24,B91,C61 |
Chr3:62793625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C61 |
Chr3:62793684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B13,B55 |
Chr3:62793799 |
TCG |
T |
2bp_deletion | frameshift_variant | 5 | A21,B115,B70,B91,C61 |
Chr3:62793799 |
TCG |
T |
2bp_deletion | CDS_variant | 5 | A21,B115,B70,B91,C61 |
Chr3:62793800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803811.1PF00069
Pkinase 4-248 aa
PF07714
PK_Tyr_Ser-Thr 6-253 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803811.1 |
Pfam | PF00069 |
Pkinase | Domain | 4 | 248 | 2.9e-41 | 142.3 | Protein kinase domain |
XP_057803811.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 6 | 253 | 1e-41 | 143.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。