Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004471`

染色体: Chr03 坐标: 62800487-62801611 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004471`
名称	SmilChr03G004471
描述	uncharacterized SmilChr03G004471
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62800487 - 62801611 / `-`

ID 对照

NCBI Gene ID	`LOC131019143`
GeneID	`131019143`
locus_tag	`-`
NCBI Name	`LOC131019143`
原始查询	`SmilChr03G004471`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:838724]; symbol=AT1G21280; hit=AT1G21280; species=arabidopsis; confidence=low
产物	Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:838724]; symbol=AT1G21280; hit=AT1G21280; species=arabidopsis; confidence=low
Arabidopsis	`AT1G21280` (AT1G21280) Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:838724] identity=34; qcov=0.503; evalue=2.68e-31; confidence=low
Rice	`Os01g0909600` - identity=26.5; qcov=0.313; evalue=5.92e-07; confidence=low
GO	-
KEGG	-
Pfam	PF14244 (Retrotran_gag_3)
InterPro	-
eggNOG	-
NR	GeneID:131019143

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057803812.1`
2	Nucleus	细胞核	0.60000	`XP_057803812.1`
3	Cytosol	细胞质基质	0.40000	`XP_057803812.1`
4	Chromosome	染色体	0.00000	`XP_057803812.1`
5	Centromere	着丝粒	0.00000	`XP_057803812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62800506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C54,C79
`Chr3:62800534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:62800640`	`T`	`TCA`	2bp_insertion	frameshift_variant	3	A20,B88,C15
`Chr3:62800640`	`T`	`TCA`	2bp_insertion	CDS_variant	3	A20,B88,C15
`Chr3:62800658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:62800669`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A16,A19,B109,B112,B119,B12,B136,B18,B2,B22,B24,B29,B32,B36,B46,B6,B64,B83,B88,C2,C22,C24,C27,C32,C39,C40,C49,C5,C52,C54,C59,C68,C74,C79,C85,D11,D7
`Chr3:62800672`	`G`	`A`	EMS_canonical_SNV	stop_gained	31	A1,A15,A19,A3,A4,A8,B1,B118,B12,B122,B128,B26,B35,B45,B5,B59,B64,B74,B78,B86,B90,B92,B97,B99,C21,C36,C53,C74,C80,C81,D8
`Chr3:62800775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,B59
`Chr3:62800851`	`T`	`TA`	1bp_insertion	frameshift_variant	2	A4,C31
`Chr3:62800851`	`T`	`TA`	1bp_insertion	CDS_variant	2	A4,C31
`Chr3:62800866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,C19,C3,C31,C7
`Chr3:62800900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B64,B66,B86,B98,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803812.1

374 aa

187

374

Retrotran_gag_3

PF14244 Retrotran_gag_3 64-111 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803812.1`	Pfam	`PF14244`	Retrotran_gag_3	Domain	64	111	3.3e-17	62.7	Gag-polypeptide of LTR copia-type

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947829.1
ATGGGGAAAATTCGGCACACTAAGTGGAATGTTCTCGTTGATGAGGAAGCAGGCACCATGAATGAGGAAGACATGGAGGATTCGTCTGCTAATGAGGATTTACGTCGCCGATCTGGAGATGATCGACGAAATCATAGATCTGATTCATCCGCTTTGGATTCAAAGCAAATCGAAGAAATATTGCAGCTGCACAATGCGGATCATCCAGGAATGCAGCTGGTTTCTGCTCAACTCACAGGTAATAACTTCCTCAACTGGAG...

CDS

1 records

下载 CDS FASTA

LOC131019143
ATGGGGAAAATTCGGCACACTAAGTGGAATGTTCTCGTTGATGAGGAAGCAGGCACCATGAATGAGGAAGACATGGAGGATTCGTCTGCTAATGAGGATTTACGTCGCCGATCTGGAGATGATCGACGAAATCATAGATCTGATTCATCCGCTTTGGATTCAAAGCAAATCGAAGAAATATTGCAGCTGCACAATGCGGATCATCCAGGAATGCAGCTGGTTTCTGCTCAACTCACAGGTAATAACTTCCTCAACTGGAG...

Protein

1 records

下载 Protein FASTA

XP_057803812.1
MGKIRHTKWNVLVDEEAGTMNEEDMEDSSANEDLRRRSGDDRRNHRSDSSALDSKQIEEILQLHNADHPGMQLVSAQLTGNNFLNWSRSVKRALGAKSKLELLDGTLPEPDFASPYYKAWIKADYMISSWIINSISKDLVNAFVHIDNTQKLWDALNQRFGRSNGPKIYRLQREIGKYTQGNQSVLVYFNNLTALWDEYLDMLLPPLTCVCGTRAAGVSREENQRLMQFLLGLNDSFESARSQILFLDPLPSVNRAYSMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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