当前解析结果
SmilChr03G004472| 统一新 Gene ID | SmilChr03G004472 |
|---|---|
| 名称 | SmilChr03G004472 |
| 描述 | uncharacterized SmilChr03G004472 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62821559 - 62829024 / + |
| NCBI Gene ID | LOC131019144 |
|---|---|
| GeneID | 131019144 |
| locus_tag | - |
| NCBI Name | LOC131019144 |
| 原始查询 | SmilChr03G004472 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=medium |
| 产物 | hit=Os04g0191000; species=rice; confidence=medium |
| Arabidopsis | AT3G29750 (AT3G29750)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:822661] identity=31.4; qcov=0.137; evalue=2.24e-10; confidence=weak |
| Rice | Os04g0191000- identity=39; qcov=0.796; evalue=9.17e-144; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019144 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803813.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803813.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803813.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803813.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803813.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62821570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,B38 |
Chr3:62821597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:62821629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C41 |
Chr3:62821638 |
G |
GCT |
2bp_insertion | frameshift_variant | 2 | C11,C41 |
Chr3:62821638 |
G |
GCT |
2bp_insertion | CDS_variant | 2 | C11,C41 |
Chr3:62821640 |
AAC |
A |
2bp_deletion | frameshift_variant | 2 | C11,C41 |
Chr3:62821640 |
AAC |
A |
2bp_deletion | CDS_variant | 2 | C11,C41 |
Chr3:62821649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C41 |
Chr3:62821685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,C11,C41 |
Chr3:62821703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B117,C47,C48,C52 |
Chr3:62821715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,C11,C41 |
Chr3:62821721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B117,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803813.1PF03732
PEG10_N-capsid 48-119 aa
PF19259
Ty3_capsid 61-198 aa
PF13650
Asp_protease_2 352-433 aa
PF13975
gag-asp_proteas 352-436 aa
PF08284
RVP_2 355-441 aa
PF30863
PRO_PEG10-RTL1 356-438 aa
PF00078
RVT_1 575-734 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803813.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 48 | 119 | 1.5e-14 | 54.8 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057803813.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 61 | 198 | 2.9e-14 | 53.6 | Ty3 transposon capsid-like protein |
XP_057803813.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 352 | 433 | 6.9e-06 | 27.4 | Aspartyl protease |
XP_057803813.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 352 | 436 | 1.6e-07 | 32.5 | gag-polyprotein putative aspartyl protease |
XP_057803813.1 |
Pfam | PF08284 |
RVP_2 | Domain | 355 | 441 | 4.4e-14 | 53.2 | Retroviral aspartyl protease |
XP_057803813.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 356 | 438 | 4.6e-09 | 37.4 | PEG10/RTL1 protease domain |
XP_057803813.1 |
Pfam | PF00078 |
RVT_1 | Domain | 575 | 734 | 6e-40 | 138.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。