Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004473`

染色体: Chr03 坐标: 62832482-62836224 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004473`
名称	SmilChr03G004473
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62832482 - 62836224 / `-`

ID 对照

NCBI Gene ID	`LOC131019145`
GeneID	`131019145`
locus_tag	`-`
NCBI Name	`LOC131019145`
原始查询	`SmilChr03G004473`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=33.3; qcov=1.07; evalue=0; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=38.7; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019145

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803814.1`
2	Nucleus	细胞核	0.00000	`XP_057803814.1`
3	Chromosome	染色体	0.00000	`XP_057803814.1`
4	Centromere	着丝粒	0.00000	`XP_057803814.1`
5	Chromatin	染色质	0.00000	`XP_057803814.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62832550`	`GC`	`G`	1bp_deletion	frameshift_variant	3	B73,C45,C79
`Chr3:62832550`	`GC`	`G`	1bp_deletion	CDS_variant	3	B73,C45,C79
`Chr3:62832551`	`C`	`CA`	1bp_insertion	frameshift_variant	47	A18,A25,A8,B100,B114,B118,B126,B13,B130,B132,B133,B137,B14,B15,B21,B27,B30,B33,B41,B46,B51,B54,B60,B62,B63,B64,B69,B76,B8,B80,B82,B86,B98,C10,C14,C38,C4,C46,C49,C50,C53,C60,C62,C72,C80,D3,D9
`Chr3:62832566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr3:62832589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B19,C30
`Chr3:62832597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,B38
`Chr3:62832600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr3:62832618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B92
`Chr3:62832631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B19,C48
`Chr3:62832687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,C32,C82
`Chr3:62832705`	`ATC`	`A`	2bp_deletion	frameshift_variant	14	A2,B104,B125,B47,B48,B73,B90,B92,C3,C35,C48,C57,C59,C61
`Chr3:62832714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B74,C11,C69,C75,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803814.1

1157 aa

578

1157

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-204 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF00560 LRR_1 193-214 aa PF00560 LRR_1 266-288 aa PF00560 LRR_1 290-312 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 364-422 aa PF00560 LRR_1 387-408 aa PF13855 LRR_8 435-495 aa PF00560 LRR_1 436-458 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-750 aa PF00069 Pkinase 873-1141 aa PF07714 PK_Tyr_Ser-Thr 875-1143 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803814.1`	Pfam	`PF08263`	LRRNT_2	Family	33	68	1e-05	26.4	Leucine rich repeat N-terminal domain
`XP_057803814.1`	Pfam	`PF13855`	LRR_8	Repeat	144	204	1.6e-47	159.8	Leucine rich repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	193	214	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	266	288	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	290	312	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	364	385	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF13855`	LRR_8	Repeat	364	422	1.6e-47	159.8	Leucine rich repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	387	408	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF13855`	LRR_8	Repeat	435	495	1.6e-47	159.8	Leucine rich repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	436	458	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	512	534	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	705	727	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00560`	LRR_1	Repeat	729	750	1.9e-58	182.4	Leucine Rich Repeat
`XP_057803814.1`	Pfam	`PF00069`	Pkinase	Domain	873	1141	1.1e-38	133.9	Protein kinase domain
`XP_057803814.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	875	1143	1.7e-39	136.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947831.1
ATGGAGAAAAAGCTTTCTTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

CDS

1 records

下载 CDS FASTA

LOC131019145
ATGGAGAAAAAGCTTTCTTGCATTTTGCAGTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGCCAC...

Protein

1 records

下载 Protein FASTA

XP_057803814.1
MEKKLSCILQYAFLITITFQMLSSEAKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLRRNLFHGDLPQELSLLRRLKFISLRLNNFTGDIPPMLGQLPKLEYLSLHNNSFIGSIPKSLSNLTNLQYLSLSSNSLSGEIPKELGRLQSLQTLYVEYNHLSGAIPSAIFNISTLVAIALTGNELSGSLPTDMCHNLPFLTVLGLSLNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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