当前解析结果
SmilChr03G004475| 统一新 Gene ID | SmilChr03G004475 |
|---|---|
| 名称 | SmilChr03G004475 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62860215 - 62864967 / - |
| NCBI Gene ID | LOC131015350 |
|---|---|
| GeneID | 131015350 |
| locus_tag | - |
| NCBI Name | LOC131015350 |
| 原始查询 | SmilChr03G004475 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=36.8; qcov=1.03; evalue=2.79e-125; confidence=medium |
| Rice | Os11g0208900- identity=40.6; qcov=0.997; evalue=1.44e-135; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015350 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799707.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799707.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799707.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799707.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799707.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62862224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B40,B60,C63 |
Chr3:62862229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,C84,C87 |
Chr3:62862264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr3:62862276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C63,C67 |
Chr3:62862294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C63,C67 |
Chr3:62862368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr3:62862371 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A4,B119,B67 |
Chr3:62862371 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A4,B119,B67 |
Chr3:62862423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:62862483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr3:62862890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B105 |
Chr3:62862991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799707.1PF13855
LRR_8 1-58 aa
PF00560
LRR_1 24-45 aa
PF00560
LRR_1 47-68 aa
PF00560
LRR_1 96-117 aa
PF00560
LRR_1 167-189 aa
PF00069
Pkinase 311-481 aa
PF07714
PK_Tyr_Ser-Thr 314-463 aa
PF07714
PK_Tyr_Ser-Thr 506-614 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799707.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 1 | 58 | 1e-17 | 64.3 | Leucine rich repeat |
XP_057799707.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 24 | 45 | 3.7e-21 | 71.4 | Leucine Rich Repeat |
XP_057799707.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 47 | 68 | 3.7e-21 | 71.4 | Leucine Rich Repeat |
XP_057799707.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 117 | 3.7e-21 | 71.4 | Leucine Rich Repeat |
XP_057799707.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 189 | 3.7e-21 | 71.4 | Leucine Rich Repeat |
XP_057799707.1 |
Pfam | PF00069 |
Pkinase | Domain | 311 | 481 | 1.7e-34 | 120.2 | Protein kinase domain |
XP_057799707.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 463 | 1.6e-34 | 120.1 | Protein tyrosine and serine/threonine kinase |
XP_057799707.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 506 | 614 | 1.6e-34 | 120.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。