Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004485`

染色体: Chr03 坐标: 62971886-62976062 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004485`
名称	SmilChr03G004485
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	62971886 - 62976062 / `-`

ID 对照

NCBI Gene ID	`LOC131019150`
GeneID	`131019150`
locus_tag	`-`
NCBI Name	`LOC131019150`
原始查询	`SmilChr03G004485`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=33.7; qcov=1.07; evalue=5.69e-166; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=38.8; qcov=0.99; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019150

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803818.1`
2	Nucleus	细胞核	0.00000	`XP_057803818.1`
3	Chromosome	染色体	0.00000	`XP_057803818.1`
4	Centromere	着丝粒	0.00000	`XP_057803818.1`
5	Chromatin	染色质	0.00000	`XP_057803818.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:62972752`	`TA`	`T`	1bp_deletion	frameshift_variant	18	A25,A5,B115,B18,B39,B44,B57,B59,B69,B76,B86,B93,C28,C4,C41,C46,C72,C77
`Chr3:62972755`	`A`	`AG`	1bp_insertion	frameshift_variant	17	A25,A5,B115,B18,B39,B44,B57,B59,B69,B76,B86,B93,C28,C4,C41,C72,C77
`Chr3:62972834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:62972861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B10
`Chr3:62972866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,C45
`Chr3:62972869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr3:62972879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,C32,C38
`Chr3:62972884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,B55,C49
`Chr3:62972904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B38,C31,D5
`Chr3:62972945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,C32,C38
`Chr3:62972957`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:62972996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C13,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803818.1

1055 aa

528

1055

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 35-70 aa PF00560 LRR_1 147-169 aa PF00560 LRR_1 171-193 aa PF00560 LRR_1 195-216 aa PF00560 LRR_1 268-290 aa PF00560 LRR_1 292-314 aa PF00560 LRR_1 366-387 aa PF13855 LRR_8 366-424 aa PF00560 LRR_1 439-460 aa PF00560 LRR_1 514-536 aa PF00560 LRR_1 588-609 aa PF00560 LRR_1 635-657 aa PF00560 LRR_1 660-681 aa PF00560 LRR_1 686-705 aa PF00560 LRR_1 707-729 aa PF00560 LRR_1 731-752 aa PF00069 Pkinase 875-1042 aa PF07714 PK_Tyr_Ser-Thr 878-1033 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803818.1`	Pfam	`PF08263`	LRRNT_2	Family	35	70	1e-05	26.4	Leucine rich repeat N-terminal domain
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	147	169	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	171	193	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	195	216	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	268	290	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	292	314	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	366	387	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF13855`	LRR_8	Repeat	366	424	3.3e-48	162.0	Leucine rich repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	439	460	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	514	536	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	588	609	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	635	657	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	660	681	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	686	705	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	707	729	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00560`	LRR_1	Repeat	731	752	8e-58	180.5	Leucine Rich Repeat
`XP_057803818.1`	Pfam	`PF00069`	Pkinase	Domain	875	1042	1.5e-30	107.2	Protein kinase domain
`XP_057803818.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	878	1033	3.2e-27	96.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947835.1
ATGGAGAAAAACCTTTCTTGCATTTTGCAGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAATATACATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTC...

CDS

1 records

下载 CDS FASTA

LOC131019150
ATGGAGAAAAACCTTTCTTGCATTTTGCAGTATGCATTCCTAATCACCATAACCTTCCCAATGCTTTCTTCTGAAGCCAAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAATATACATCTCTTTTACTTGCAACTAATTGGACCAATTCGAGCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTGCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTC...

Protein

1 records

下载 Protein FASTA

XP_057803818.1
MEKNLSCILQYAFLITITFPMLSSEAKAKQPLSLATDQTALLSLKYTSLLLATNWTNSSSVCTWIGVTCSLRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFYGDLPQELFLLRRLKFISFRLNKFTGDIPPMLGQLPKLEYLSLRNNSFIGSIPKSLSNLTNLQFLDLSFNSLSGEIPKEFGRLQSLQTLYVESNHLSGAIPSAIFNISTLIVLALRNNELSGSLPTDMCRNLPFLALIRLSINRLSGAIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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