Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004489`

染色体: Chr03 坐标: 63007339-63011525 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004489`
名称	SmilChr03G004489
描述	receptor kinase-like protein Xa21
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	63007339 - 63011525 / `-`

ID 对照

NCBI Gene ID	`LOC131019152`
GeneID	`131019152`
locus_tag	`-`
NCBI Name	`LOC131019152`
原始查询	`SmilChr03G004489`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor kinase-like protein Xa21
产物	receptor kinase-like protein Xa21
Arabidopsis	`AT4G20140` (GSO1) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760] identity=32.6; qcov=1.07; evalue=0; confidence=low
Rice	`Os02g0216000` (B1307A11.13) - identity=38.9; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131019152

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803820.1`
2	Nucleus	细胞核	0.00000	`XP_057803820.1`
3	Chromosome	染色体	0.00000	`XP_057803820.1`
4	Centromere	着丝粒	0.00000	`XP_057803820.1`
5	Chromatin	染色质	0.00000	`XP_057803820.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:63007817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:63007880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B110
`Chr3:63007890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr3:63007943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,C38,C72
`Chr3:63008036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr3:63008054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B28,B86
`Chr3:63008062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:63008127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,C75
`Chr3:63008153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,C30
`Chr3:63008155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr3:63008158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,B85,C43,C57
`Chr3:63008160`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B140,B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803820.1

1184 aa

592

1184

LRRNT_2

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 33-68 aa PF13855 LRR_8 144-203 aa PF00560 LRR_1 145-167 aa PF00560 LRR_1 169-191 aa PF13855 LRR_8 193-253 aa PF00560 LRR_1 243-264 aa PF00560 LRR_1 267-288 aa PF00560 LRR_1 290-311 aa PF00560 LRR_1 364-385 aa PF13855 LRR_8 364-422 aa PF00560 LRR_1 387-408 aa PF00560 LRR_1 512-534 aa PF00560 LRR_1 586-607 aa PF00560 LRR_1 658-679 aa PF00560 LRR_1 684-703 aa PF00560 LRR_1 705-727 aa PF00560 LRR_1 729-751 aa PF00069 Pkinase 872-1040 aa PF07714 PK_Tyr_Ser-Thr 875-1024 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803820.1`	Pfam	`PF08263`	LRRNT_2	Family	33	68	4.5e-05	24.3	Leucine rich repeat N-terminal domain
`XP_057803820.1`	Pfam	`PF13855`	LRR_8	Repeat	144	203	5e-47	158.2	Leucine rich repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	145	167	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	169	191	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF13855`	LRR_8	Repeat	193	253	5e-47	158.2	Leucine rich repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	243	264	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	267	288	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	290	311	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	364	385	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF13855`	LRR_8	Repeat	364	422	5e-47	158.2	Leucine rich repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	387	408	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	512	534	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	586	607	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	658	679	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	684	703	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	705	727	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00560`	LRR_1	Repeat	729	751	6.8e-59	183.7	Leucine Rich Repeat
`XP_057803820.1`	Pfam	`PF00069`	Pkinase	Domain	872	1040	4.4e-34	118.8	Protein kinase domain
`XP_057803820.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	875	1024	3.6e-34	118.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947837.1
ATGGAGAAAAAGCTTCATTGCATTTTTGCTTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGGCAC...

CDS

1 records

下载 CDS FASTA

LOC131019152
ATGGAGAAAAAGCTTCATTGCATTTTTGCTTATGCATTCCTAATTACCATAACCTTCCAAATGCTTTCTTCTGAAGCCAAACAACCTCTGAGCCTTGCAACTGATCAAACTGCCCTTCTTTCACTCAAACATACATCTCTTTTACTTGCAACTAATTGGACCAACTCCACCTCCGTCTGCACCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACATGGCTCTCTCCGGCAC...

Protein

1 records

下载 Protein FASTA

XP_057803820.1
MEKKLHCIFAYAFLITITFQMLSSEAKQPLSLATDQTALLSLKHTSLLLATNWTNSTSVCTWIGVTCSFRHHRVAALNLSNMALSGTIPPQLGHLSFLVSLDLTNNHFYGDLPQELSLLRRLKFISLRLNNFTGDIPLMLGQLPKLEHLNLRNNSFIGSIPKSLSNLTNLKFLDLTYNSLSGEIPKEFGRLQSLRKLSVQFNRVSGAIPSAIFNISTLVTIALRDNELSGSLPTDMCHNLPFLAWLDLSNNQLSGAIPTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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