当前解析结果
SmilChr03G004498| 统一新 Gene ID | SmilChr03G004498 |
|---|---|
| 名称 | SmilChr03G004498 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63107359 - 63109003 / - |
| NCBI Gene ID | LOC131019161 |
|---|---|
| GeneID | 131019161 |
| locus_tag | - |
| NCBI Name | LOC131019161 |
| 原始查询 | SmilChr03G004498 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 |
| Arabidopsis | AT3G47570 (AT3G47570)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823911] identity=38.1; qcov=1.1; evalue=1.16e-106; confidence=medium |
| Rice | Os01g0694000- identity=41.4; qcov=1.02; evalue=2.69e-124; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019161 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803829.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803829.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803829.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803829.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803829.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63107515 |
G |
A |
EMS_canonical_SNV | stop_gained | 65 | A14,A19,A9,B114,B117,B120,B122,B123,B127,B129,B135,B137,B139,B140,B17,B18,B21,B23,B24,B30,B31,B32,B36,B39,B4,B48,B51,B54,B57,B63,B64,B66,B69,B71,B80,B86,B89,B91,B95,B97,C1,C15,C16,C19,C22,C25,C26,C28,C29,C31,C33,C34,C38,C46,C57,C59,C63,C72,C77,C79,C80,C81,C83,C86,D7 |
Chr3:63107551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,C4 |
Chr3:63107574 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B21,B89,C33 |
Chr3:63107574 |
TC |
T |
1bp_deletion | CDS_variant | 3 | B21,B89,C33 |
Chr3:63107575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B74,C16,C34 |
Chr3:63107576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B31 |
Chr3:63107587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B18,B24,B83 |
Chr3:63107602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:63107614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr3:63107626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B86,C80,C81 |
Chr3:63107628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B134,B99,C73,C74 |
Chr3:63107656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803829.1PF00560
LRR_1 17-39 aa
PF13855
LRR_8 17-76 aa
PF00560
LRR_1 41-63 aa
PF00069
Pkinase 186-454 aa
PF07714
PK_Tyr_Ser-Thr 188-457 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 17 | 39 | 1.7e-08 | 33.7 | Leucine Rich Repeat |
XP_057803829.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 17 | 76 | 1.8e-07 | 31.5 | Leucine rich repeat |
XP_057803829.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 41 | 63 | 1.7e-08 | 33.7 | Leucine Rich Repeat |
XP_057803829.1 |
Pfam | PF00069 |
Pkinase | Domain | 186 | 454 | 2.1e-40 | 139.5 | Protein kinase domain |
XP_057803829.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 188 | 457 | 2.9e-40 | 138.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。