当前解析结果
SmilChr03G004499| 统一新 Gene ID | SmilChr03G004499 |
|---|---|
| 名称 | SmilChr03G004499 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 63110408 - 63111216 / - |
| NCBI Gene ID | LOC131019162 |
|---|---|
| GeneID | 131019162 |
| locus_tag | - |
| NCBI Name | LOC131019162 |
| 原始查询 | SmilChr03G004499 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At4g36180 |
| Arabidopsis | AT5G20480 (EFR)EF-TU receptor [Source:NCBI gene (formerly Entrezgene);Acc:832170] identity=36.2; qcov=0.945; evalue=1.4e-36; confidence=medium |
| Rice | Os11g0490200- identity=43.1; qcov=0.913; evalue=2.93e-48; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23211 (LRR_LRWD1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019162 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803830.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803830.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803830.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803830.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803830.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:63110500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr3:63110591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr3:63110616 |
C |
CGG |
2bp_insertion | frameshift_variant | 9 | B25,B4,B72,B76,B87,B92,C49,C64,C77 |
Chr3:63110618 |
TAC |
T |
2bp_deletion | frameshift_variant | 9 | B25,B4,B72,B76,B87,B92,C49,C64,C77 |
Chr3:63110645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:63110764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B71,B93,C26,C29 |
Chr3:63110767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B48,B73,C1,C15 |
Chr3:63110826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B112,C45,D3 |
Chr3:63110849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C64 |
Chr3:63110865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr3:63110893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B94 |
Chr3:63110908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,C26,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803830.1PF08263
LRRNT_2 35-70 aa
PF23211
LRR_LRWD1 72-159 aa
PF13855
LRR_8 146-206 aa
PF00560
LRR_1 147-169 aa
PF00560
LRR_1 171-193 aa
PF00560
LRR_1 195-216 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803830.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 35 | 70 | 9.6e-07 | 29.7 | Leucine rich repeat N-terminal domain |
XP_057803830.1 |
Pfam | PF23211 |
LRR_LRWD1 | Repeat | 72 | 159 | 4.4e-08 | 33.8 | Leucine-rich repeat and WD repeat-containing protein 1, LRR |
XP_057803830.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 146 | 206 | 1.8e-16 | 60.3 | Leucine rich repeat |
XP_057803830.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 147 | 169 | 8e-18 | 61.4 | Leucine Rich Repeat |
XP_057803830.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 171 | 193 | 8e-18 | 61.4 | Leucine Rich Repeat |
XP_057803830.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 195 | 216 | 8e-18 | 61.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。